RNA id: TCONS_00030907


Basic Information

Item Value
RNA id TCONS_00030907
length 2091
RNA type mRNA
GC content 0.52
exon number 16
gene id XLOC_015452
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24781026 ~ 24866649 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGCGTGCCGGCAAACTGTGGATTCTCTTTCTCAGCTGATCGGGCGTTGAAGCAAAAGAACTGGAATTTGTACGGATCCCCCTGTGCCGTCAACAGACCCATCGACATTGTGCAGAAACGCAGGCGTTTTGATGTGGAGAATGGGCTGTCGGTGGGCCGCAGTCCTCTGGACTCTCAGGCCAGTCCCGGCTCTGGCCTCGTGTTGCAGGCCAATTTCCCTCACAGTCAGCGGCGCGAGTCTTTCCTGTACCGCTCCGACTCGGACTTTGACCTCTCACCCAAGGCCATGTCTCGAAATTCATCCACGGCCAGTGAGCTACATGGAGAAGACATGATAGTTACACCATTTGCACAGGTCCTTGCCAGCTTGAGGACTGTGCGGAGCAACTTTGCCGTTTTGACCCATCAGCAAGACCGCGTCCCTAGCAATGGTCATGAGTATATTAATGTGCTGCTGTATTTTGCAGAGGAGCCATTTCAGAAGTTGGCAGTGGAGACTCTGGACGAGCTGGACTGGTGTCTCGAACAGCTGGAGACTCTCAAGACACGTCACTCGGTCAGCGAGATGGCATCTAACAAGTTTAAAAGGATGCTGAATCGAGAATTAACCCAGCTCTCAGAGACTAGCAAGTCAGGAAACCAGGTCTCAGAGTACATCTCCAGCACATTCTTGGAGAAGCAACATGACATGGATATTATGTCCACCCCAAGCAAggagaaggagaagaagaagcgGCCCATGTCTCAGATCAGTGGCGTGAAGAAGCCCACACACAGCTCCAACATCGCTCCCTCCAGCATCCCTCGTTTTGGCGTCAGCACCAACCGGGAGGATCTACTGGCTAAAGAGTTAGAAGACTTTGACAGATGGGGTGTGGATATGTTCAAGATATCCGAGTGTTCTGGCAACAGACCGCTAACGGTGGCAATGTACACAACCTTTCAGGAAAGAGACTTGTTGAAATCCTTCAAAATTCCTGTAGACACATTCATTAACTACATGACGGCTCTGGAGGAAAACTACCGCTCAGATGTAGCTTACCATAACAGCATCCATGCAGCTGATGTGGTCCAGTCCACCCATGTCCTGCTGTCCACTCCTGCCCTTGAGGCTGTATTCACTGACCTTGAGATCTTGGCTGCAATGTTTGCCAGTGCCATTCATGACGTGGACCATCCTGGAGTGTCCAACCAATTCCTCATTAACACAAACTCAGAGCTGGCACTAATGTACAACGATTCCTCTGTTCTGGAGAACCACCACCTGGCTGTTGGCTTCAAGCTGCTGCAGGAAGAAAACTGTGACATTTTCCAGAACCTGACCAAGAAACAGAGGCAGTCGCTGCGCAAGATGGTCATTGACATGgtcttggccACTGATATGTCAAAGCATATGAACTTATTAGCGGATCTCAAGACTATGGTGGAGACAAAGAAGGTGACCAGCCTGGGTGTACTACTGCTAGACAACTATTCAGATCGCATACAGgtTCTTCAGAACATGGTGCACTGCGCTGACCTGAGCAACCCAACGAAGCCGCTGGAGCTTTACCGTCAGTGGACAGATCGCATCATGGTGGAGTTTTTCACTCAGGGCGACCGAGAGAGAGATAAGGGGATGGAGATCAGCCCCATGTGTGACAAACACAATGCCTCTATTGAGAAATCACAGGTGGGCTTCATCGACTACATCGTGCACCCGCTGTGGGAGACCTGGGCGGACCTGGTTCACCCTGATGCCCAGGAGATCCTGGACACGCTGGAGGACAATCGAGAGTGGTACCAAAGCATGATCCCTCACAGTCCCACCTCCACCCCAGAGGACAAGAGTGGCATCGCTTCAGCGGGGGATAAATTCCAGTTTGAACTGACCTTGGAAGAGGAAGGTGAGTCTGACGTGGAGAGTCCCGTGGATGAAGACTTGACTTCCAGCAAACAAACATCTCCAGCTGCCCGCTTGCTGTCCGCTCGCTCCCCCGGCTGCAGGACAATGTCTTTTAAGATGGGCGAGCCACCAGACAGCGAAGATGAAGACAAAGAACTTGACCAAGAAGGGAAAAGCGTGTCGTGCCTGCGTTTGGGAACATAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0005575 cellular_component cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-373 Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm. Orthologous to human PDE4C (phosphodiesterase 4C).

Ensembl:

ensembl_id ENSDART00000002096

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030903 lncRNA upstream 55202 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00033542 lncRNA upstream 99003 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00033541 lncRNA upstream 207722 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00030894 lncRNA upstream 310092 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00030890 lncRNA upstream 331636 24484275 ~ 24488154 (+) False XLOC_015443
TCONS_00033543 lncRNA downstream 40705 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00033263 lncRNA downstream 49332 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00030918 lncRNA downstream 267562 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00030924 lncRNA downstream 452697 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030930 lncRNA downstream 971134 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00030904 mRNA upstream 40878 24770435 ~ 24778912 (+) True XLOC_015451
TCONS_00030902 mRNA upstream 52320 24762567 ~ 24767470 (+) False XLOC_015450
TCONS_00030901 mRNA upstream 64443 24722771 ~ 24755347 (+) True XLOC_015448
TCONS_00030900 mRNA upstream 71415 24700922 ~ 24748375 (+) False XLOC_015448
TCONS_00030899 mRNA upstream 136425 24638367 ~ 24683365 (+) True XLOC_015447
TCONS_00030909 mRNA downstream 4573 24867534 ~ 24878813 (+) False XLOC_015453
TCONS_00030910 mRNA downstream 5049 24868010 ~ 24878659 (+) True XLOC_015453
TCONS_00030911 mRNA downstream 23026 24885987 ~ 24886752 (+) True XLOC_015454
TCONS_00030912 mRNA downstream 68716 24931677 ~ 24932753 (+) True XLOC_015457
TCONS_00030913 mRNA downstream 73805 24936766 ~ 24944819 (+) True XLOC_015458
TCONS_00030897 other upstream 279025 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 279065 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 321949 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 468750 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030870 other upstream 804847 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030940 other downstream 1171214 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 1423504 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 1635573 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 1635600 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 1635601 26498562 ~ 26501305 (+) False XLOC_015477

Expression Profile

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