RNA id: XM_036977324.1


Basic Information

Item Value
RNA id XM_036977324.1
length 2273
RNA type mRNA
GC content 0.50
exon number 12
gene id si:ch211-127i16.2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 34107180 ~ 34147326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTTGGGTTTTTTCTTCCAGTCCCGAAGTCATCCACATGACTGTTTATGGCTCGATTATGTAAACGACTTATCTGGTGTAAAAGTTTGATAAAGCAGTTACAGTCTTCAGTACGAAACATTTAGCCAACAGTTAAATTAGAATAGTCCAAGTTTTCAGAGTTTTGCAGTCATGACTGAAGAAACGTGGGATGTTGTTATTGTCGGCGCTGGGCTGTCAGGACTGAGTGCTGCTCAGACTCTGCGGAAGAGAAATGGCAAACTCAGAATATTAATTCTGGAAGGAAAAGACCGGGTAGGAGGACGAACTGTTACCCAGGAATTACTTGCCGCCCACGGCATTGATCGCTGGGACATGGGAGGGCAGTGGGTTGGCAGCACTCAGACATACGTCATGGACCTCATTCAGGAGTTTGGCCTGgaggtctacacacaatacaccacagGCAAGAAAGTACACCACGTTGGTGGTCCTCGTGCCAAGGTTcgcagcagcagcaccagtatCCCTGCCCTCTCTACACTGGTGCTACTGGACCTGTCACAGCTCGTCTGGAAGATTGACAGGTTGAGTTCCACAGTGTCAGTGGAGGACCCCATGAAGACCCCCAATGCCCAGGAGTTGGACAGTATGACCCTACATTCCTACATAGAGAAACATGCCTGGACAGAAGaGATGAAGGAGGAGATGGGTGTGTGCAGCCGGGTTGTGTTTGGTATGGAGCCCAATCAGATGTCCTTCCTCTACTTCCTCATGTATGCTGCAGCAGCTGGAGGTGTCCTGTGCCTGCTGGAGAGCACCCCAGGCTCAGCACAGGAGTTCAGGGTCAAGGGGGGAACCCAGCAGCTGTCAGAGCGTTTAGCCCAGCAGATTGGGTGGGAGAGTGTCCGGCTGGGCAAGGCTGTGACGGCCATATGGCAGGACGCTGAGCAGGCCAAGGTGATGACAGCCACCCACTCCTACCTGTGCAGAGCAGTGATTGTCACCTGCCCTCCTCACCTggcagCTAAGATCCACTACCAACCTGCTCTACCCATTCAGAGAGAACACCTCACACAGAACATGCCTGTTGGGCACTTGATGAAGTTTGTCATCACCTACCAGATGgcgTTCTGGCGTGAGAAGGGTTTCTCGGGAGAGATAGTGGCACGACCCTCTGCGGATTGTCCCTTGAGTATCACCTTCGACGGCACCAGTCCCAGTGGGAGTGCTGCTCTTGTGGGCTTCATCTCTGGCATGCAGGCCTACGATTGGAGCTCCAGAGAGCTGAGCGAGAGGAGGGATGCTGTCATTCTCAGCCTGGTGAAATACCTGGGAGAGGAGGCTGCTAGCTACATCCACTATGAGGAGAAAGACTGGGCCTTGGAGGAGTACAGCGGGGGTTGTCCTGTTAATGTCATGGCACCGGGTCTGCTGACATATTACCACCCCAGCCTCCGCACGCCCTGTGGCAGGATCCACTGGGCCGGCACGGAGACGGCCACCCAGTGGTGTGGCTATATGGATGGGGCAATTCAGTCAGGTCAGAGGGCAGCCCTAGAAGTCCTAGCCAGGCTGTGCCCTTTCACCCTGAcccaggaggagcaggaggcTGTGCAGGCTGCCCAGAACCAGAACCACGAGTCTGGACCATGCCAACACATACCTTCCACATCCCATCTCCGCAGGGCTCTGATCCTCACCACGCTCATCATGGCCACTGCTGTACTATTGGCTCAGCCACAGCTCTGCCGAGACTGGATTGGACAGGCTCGGCAGGTAGTGCTACGAAGGTTTGCTTTGTGGTAATAAAATATGCTGTTGTGTTGGAAAAACATCCACTTGACAGGGAAATGCCTCCGCTCACAGATATCTAAAGATGTTAAATACGATTGAATTATCTGTGACATACAGTATGGTTAACACTGTTTGCCTGGTGGACATTTTTCATTTAAAGAAATGTAATGCTTGTACATTGTAatgtggtggtgggtgggggtgAGACTatacagaaaaaaaaaatgtttactttgGACTGCATTGTACTGTAAGTCAATTCAATTATATGTAAAGGGTTTTATATGTGAACATTCCCTACAGTCGTATTAAGTCATACAGTgccgtcagaaagtattcacagcctTGATTTTTTCCGCATTTCGTTCTGTTACAAAGttggattaaaatggatttaattgtatttttttgtcaacgatcgacacaaaatactctaatgtcaaagtagaagaaAAATGCTAAAATGTAAAAAGGTGTATGAAAATAaaacacatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445776 lncRNA upstream 14994 34091852 ~ 34092186 (+) True G392756
TU445033 lncRNA upstream 17386 34089095 ~ 34089794 (+) True G392063
TU445031 lncRNA upstream 18272 34088293 ~ 34088908 (+) True LOC110523649
TU445205 lncRNA upstream 28070 34078854 ~ 34079110 (+) True G392226
TU445172 lncRNA upstream 35795 34028045 ~ 34071385 (+) True G392195
TU445806 lncRNA downstream 380 34147706 ~ 34148701 (+) False G392776
TU445807 lncRNA downstream 1523 34148849 ~ 34150795 (+) True G392776
TU445841 lncRNA downstream 35414 34182740 ~ 34183700 (+) True G392804
TU445842 lncRNA downstream 36441 34183767 ~ 34183976 (+) True G392805
TU445843 lncRNA downstream 37993 34185319 ~ 34185533 (+) True G392806
XM_036977317.1 mRNA upstream 18196 33846773 ~ 34088984 (+) False LOC110523649
XM_036977309.1 mRNA upstream 18196 33846777 ~ 34088984 (+) False LOC110523649
XM_036977311.1 mRNA upstream 18196 33846777 ~ 34088984 (+) False LOC110523649
XM_036977313.1 mRNA upstream 18196 33846777 ~ 34088984 (+) False LOC110523649
XM_036977314.1 mRNA upstream 18196 33846777 ~ 34088984 (+) False LOC110523649
XM_021602552.2 mRNA downstream 289460 34436786 ~ 34448792 (+) True adra1ab
XM_036977338.1 mRNA downstream 939500 35086826 ~ 35198991 (+) False LOC110523660
XM_021602558.2 mRNA downstream 1206772 35354098 ~ 35357244 (+) False si:dkey-242g16.2
XM_021602557.2 mRNA downstream 1206778 35354104 ~ 35357244 (+) True si:dkey-242g16.2
XM_021602568.2 mRNA downstream 1320614 35467940 ~ 35480670 (+) True stoml2
TU444741 other upstream 745839 33360957 ~ 33361341 (+) True G391805
TU444420 other upstream 944200 33158826 ~ 33162980 (+) True G391513
TU443183 other upstream 1886647 32220181 ~ 32220533 (+) True G390393
TU442960 other upstream 2146435 31960355 ~ 31960745 (+) True G390184
TU440680 other upstream 3819356 30286951 ~ 30287824 (+) True G388019
TU445804 other downstream 148 34147474 ~ 34148701 (+) False G392776
TU448046 other downstream 1757786 35905112 ~ 35905781 (+) True G394882
TU448080 other downstream 1819611 35966937 ~ 36004829 (+) True G394910
TU448071 other downstream 1885934 36033260 ~ 36034767 (+) True you2
TU448184 other downstream 2055575 36202901 ~ 36206616 (+) True G395005

Expression Profile