RNA id: TCONS_00030946



Basic Information


Item Value
RNA id TCONS_00030946
length 760
RNA type unprocessed_pseudogene
GC content 0.40
exon number 2
gene id XLOC_015473
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26286465 ~ 26287505 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGTAAAGAAAGGAAGGTTTATGAGATTATGCAAGAGCTGAATGTGAGCTACGTCTTGGTAATCTTTGGTGGATTGACCAGATATTTATCTGATCACATTAATAAATTCCTGTGGATGTGCGTATTAGTGGAAGCACAGACACAGGGACGCACATAAGGGGACATGATTATTACACACCCACCAGGGAGTTTCATGTGGGCTTTGAGGGTTCTCCTGTCCTGCTCAACTGCCTCATGTACAAGATGTGTTTTTATCGCTTCAGACAGGTCTAACctgctgCCAAGTGTCTTCCTGGTTATGACAGAGTTGTAATGCTGAGATTGGCAATAAGGACTTTGAGTTGGATGTGCAGAAGCTTACTACATAGCACTGGCCTATCAGGATATACAAGGTCAAAGATCTTGACAATCACAGCCTCTCAAGAACGTAAACCCAGAAAGACAAACTCCCACTTTCCTTCAAAACAGTACTGTCTGCGCCCCGTCTCATGATGTGAGGGGAAACTGAATCTTTTTTTATACTTCTGTTGTAATTGCTTAAAGGGACATTCTTTTCATACCTTTTTGTTCTTGTTCGGCTTTTTAAAATCCTCAAATGTGATTTTGTCTGAACTGGGgaagaataataaaatatcacCTGAATACGGGGAAAATGTTCAAGTATGTTCATGAGCATGTGTGTAATCAGCTGGCCAGATAATTGTTTAATTTGTCTATGAATCAAACAATGATATGGCCAGCTGATTGCAGAAATGTCTCAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000144742

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033544 lncRNA upstream 119046 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00030930 lncRNA upstream 449633 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00030924 lncRNA upstream 904124 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030918 lncRNA upstream 1148676 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00033263 lncRNA upstream 1358711 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00030948 lncRNA downstream 1797 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00030952 lncRNA downstream 195392 26482897 ~ 26483391 (+) False XLOC_015476
TCONS_00030953 lncRNA downstream 204254 26491759 ~ 26494145 (+) False XLOC_015476
TCONS_00030954 lncRNA downstream 206795 26494300 ~ 26495044 (+) True XLOC_015476
TCONS_00030956 lncRNA downstream 211026 26498531 ~ 26501306 (+) False XLOC_015477
TCONS_00030945 mRNA upstream 2220 26240631 ~ 26284245 (+) True XLOC_015472
TCONS_00030943 mRNA upstream 2255 26237322 ~ 26284210 (+) False XLOC_015472
TCONS_00030944 mRNA upstream 3492 26240339 ~ 26282973 (+) False XLOC_015472
TCONS_00030942 mRNA upstream 77040 26179096 ~ 26209425 (+) True XLOC_015471
TCONS_00030941 mRNA upstream 129681 26060528 ~ 26156784 (+) True XLOC_015469
TCONS_00030947 mRNA downstream 796 26288301 ~ 26300619 (+) False XLOC_015474
TCONS_00030949 mRNA downstream 16122 26303627 ~ 26444503 (+) True XLOC_015475
TCONS_00030950 mRNA downstream 192171 26479676 ~ 26495042 (+) False XLOC_015476
TCONS_00030951 mRNA downstream 192171 26479676 ~ 26495044 (+) False XLOC_015476
TCONS_00030955 mRNA downstream 210941 26498446 ~ 26501868 (+) False XLOC_015477
TCONS_00030940 other upstream 246859 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030908 other upstream 1440466 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 1745700 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 1745740 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 1788624 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030957 other downstream 211029 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 211056 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 211057 26498562 ~ 26501305 (+) False XLOC_015477
TCONS_00030960 other downstream 212144 26499649 ~ 26499754 (+) False XLOC_015477
TCONS_00030962 other downstream 213528 26501033 ~ 26501103 (+) False XLOC_015477

Expression Profile


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