RNA id: XM_021601251.2


Basic Information

Item Value
RNA id XM_021601251.2
length 2117
RNA type mRNA
GC content 0.50
exon number 7
gene id kcnn2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35930114 ~ 35960310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTCGGTGTTCATACTTGAACAGTCTCACTTGTAAGACATTGTTTTTCTCTACTGACATGCTACTTTCCTTGAATGAATATTCGAAAAAATGTTGCAACCTTTTCAATGACGTCAAGACGGTTGTTTTGGTCCTGTCTATCCAATTGGAGCCATCACTTACATTCTACAGGAGCCGAAATGGGTCTAATCTTGCTCCGTAGCTGTCCTCCAGGACATACCACAACGCCCTTCGGCGGGTGTATGGTGGTACCCGACTGCTGCTTTAAACAGCAGCACTGACATGGAAACCCCTTTGCAGTTGCAGAACGATTTCCTTCAAGAGCAGCAGTTCCAGCATCACTGTAAGTACCAGCACTACTGCGGACCAGAGGAACGGCTCACTAAGGAGCGCAACCAATGCTGCACCTGCAATAACTGTACATGTGATGCAAGAAAAAGCCTAGTTTTTCGCGGGACGTCGCCGAACACTCAAGGAACTTTAAGGACGCCATCCGTAACGTATTCGAGGCAAGGTTCTCAGTTTAGCGTCTGTGAGTTCACGCCCTCCAGTCATGGTAGTTCATCCAGACATCATTACCATCAGCAGTGCTACAATCGGCAGCGGGGCAGCCCGAGCAGCAGCCACAGAGACAGTAACTCGTATAACGAAATAGCCATGAGTAGCTGCAGATACAACGGCGGCGTAATGCGACCGCTGAGCAACTTGAGCTCGTCCCGCAGAAACCTACACGAGTTTGATTCCGAATCCCAGCCTTTACAACCAATCTCTACCGCAGATGCGTCGGACACCCTAGCCTCTAAACCGGAGAACAATTCCACCACCCTAATGCCTTATGCATCGGGAGACGGAGGGGGTGGATGTAACAACAGTGGCAGTAAATCGGGTAAAAAGAAGAACCAGAACATTGGGCAAAAGCTTGGACATAGAAGGGCCTTGTTTGAGAAAAGGAAGCGTCTCAGCGACTATGCTTTGATCTTTGGGATGTTTGGGATcgtagttatggttatagagaCTGAACTCTCATGGGGAGCCTATGGAAAGGAGTCATTGTATTCATTAGCTCTAAAATGCCTGATAAGCCTTTCTACAATCATTCTTCTTGGTCTGATTATCATATACCACGCAAGGGAGATTCAGTTATTCATGGTAGACAATGCAGCAGATGACTGGAGGATAGCCATGACCTACGAGCGCATCTTCTTCATCTGCCTGGAGATCCTGGTGTGCGCCATCCACCCCATCCCAGGGAACTACACCTTCACCTGGACAGCGCGCCTGGCCTTCTCCTACACCCCGTCCAAGACGGACGCAGACGTGGACATCATCCTGTCTATCCCCATGTTCTTGCGGCTGTATCTCATCGCCCGCGTCATGCTGCTCCACAGCAAGCTCTTCACAGACGCCTCGTCCCGCAGTATCGGGGCGCTCAACAAAATCAACTTCAACACACGCTTTGTCATGAAGACCCTGATGACCATCTGCCCTGGCACCGTGTTGCTGGTCTTTACCATCTCGTTGTGGATCATCGCTGCGTGGACCGTGAGGGCCTGCGAGAGATACCATGACAACATGGACATAACCAGCAACTTCCTAGGAGCCATGTGGTTGATCTCAATCACTTTTCTAACCATTGGATATGGGGACATGGTCCCCAACACTTACTGTGGAAAAGGAGTCTGTCTCCTCACTGGTATTATGGGAGCCGGCTGCACAGCCTTGGTAGTGGCTGTGGTTGCAAAGAAACTGGAGTTAACCAAAGCTGAAAAACATGTTCATAATTTTATGATGGACACCCAGCTGACAAAAAGAGTGAAAAACACTGCTGCAAATGTACTCAGGGAGACGTGGCTCATCTACAAGAACACCAAACTGGTGAGGAAAATGGACCATGCCAGAGTCAGGAAGCACCAGAGGAAATTCCTCCAAGCCATTCATCAactCAGAACATCATGTATGACCTGATCTCAGACCTGaacgagagaggggaggacatggAGAAGAGGATCGCCATGCTGGAGACCAAGCTGGAGACTCTGCTGGGGAACCTGCAGGCCCTGCCAGGACTCATCAGCCAGGTCATCAGCCAGCAGCACAGGGACTTCCTGGAGGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448052 lncRNA upstream 11261 35908309 ~ 35918853 (+) False G394885
TU448049 lncRNA upstream 11261 35910895 ~ 35918853 (+) True G394885
TU448047 lncRNA upstream 23896 35906011 ~ 35906218 (+) True G394883
TU448045 lncRNA upstream 27387 35902510 ~ 35902727 (+) True G394881
TU448043 lncRNA upstream 28684 35901208 ~ 35901430 (+) True G394879
TU448093 lncRNA downstream 17646 35977856 ~ 35983731 (+) True G394923
TU448130 lncRNA downstream 139163 36099373 ~ 36108885 (+) True G394958
TU448143 lncRNA downstream 160096 36120306 ~ 36121931 (+) True G394970
TU448227 lncRNA downstream 299941 36260151 ~ 36261227 (+) True G395041
TU448221 lncRNA downstream 322521 36282731 ~ 36288452 (+) True G395035
XM_036977367.1 mRNA upstream 67488 35824213 ~ 35862626 (+) False sppl3
XM_021602602.2 mRNA downstream 2991 35963201 ~ 35966744 (+) True drg1
XM_036977374.1 mRNA downstream 45996 36006206 ~ 36019354 (+) False slc20a1b
XM_036977375.1 mRNA downstream 46648 36006858 ~ 36019354 (+) False slc20a1b
XM_036977376.1 mRNA downstream 47203 36007413 ~ 36019354 (+) True slc20a1b
NM_001160643.1 mRNA downstream 73051 36033261 ~ 36034801 (+) False you2
TU448046 other upstream 24333 35905112 ~ 35905781 (+) True G394882
TU445804 other upstream 1781413 34147474 ~ 34148701 (+) False G392776
TU444741 other upstream 2568773 33360957 ~ 33361341 (+) True G391805
TU444420 other upstream 2767134 33158826 ~ 33162980 (+) True G391513
TU443183 other upstream 3709581 32220181 ~ 32220533 (+) True G390393
TU448080 other downstream 6727 35966937 ~ 36004829 (+) True G394910
TU448071 other downstream 73050 36033260 ~ 36034767 (+) True you2
TU448184 other downstream 242691 36202901 ~ 36206616 (+) True G395005
TU448219 other downstream 320090 36280300 ~ 36301290 (+) True G395034
TU449364 other downstream 1004874 36965084 ~ 36965652 (+) True G396022

Expression Profile