RNA id: XM_021602602.2


Basic Information

Item Value
RNA id XM_021602602.2
length 1546
RNA type mRNA
GC content 0.47
exon number 9
gene id drg1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35963201 ~ 35966744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTTGGTTtgcttccctcttcctcctcgcGAGAGCCGCCAAGACCCCAGCCACAGGTTGAAAGCATGGGTGCTAGCTGTTGCTAGCTAGTTTTGTATGATTGCGTGATAAAACTACAACATTTTAAAACTTTGCTATTAAACTTGTTTAATCGTTATAGTGATATCATCTAAGGACCAGCTACAAGATGAGTTTACTCGCTAAAATAGCAGAAATTGAGGCCGAGATGGCTCGGACTCAAAAGAACAAGGCCACGTCTAACCACTTGGGGCTGCTCAAAGCTCGTCTGGCCAAGATGAGGAGAGAACTTATCACACCAAAGGGAGGCAGTGGAGGAGGCACAGGGGAAGGTTTTGATGTGGCAAAAACAGGTGATGCCCGTATCGGGTTTGTAGGGTTCCCCTCAGTGGGCAAGTCTACTTTGCTAAGTAACCTGGCAGGGGTGTACTCTGAGGTGGCGGCCTATGAGTTCACCACCCTCACCACAGTACCAGGAGTGATCCGCTACAAGGGTGCCAAAATACAGCTCCTGGATCTCCCAGGTATCATCGAGGGGGCCAAAGATGGCAAGGGTAGAGGACGACAGGTCATCGCAGTGGCTCGAACCTGCAACCTGATCCTCATAGTGTTGGATGTTCTAAAGCCTCTGGGCcacaagaagctgattgaacacgAGCTGGAGGGCTTTGGAATCCGCCTCAACAAGAAGCCGCCCAACATCGGCTTCAAGAAGAAGGACAAAGGAGGCATCAACTTCACCGTCACATGTCCACAGAGTGAGCTGGACGGTGACGCAGTGAAGAGCATCCTGGCCGAGTACAAGATCCACAACGCTGACATCACCCTGCGCAGTGACTCCACGGCTGATGACCTCATCGACGTGGTGGAGGGAAACCGAGTGTACATCCCCTGCATTTATGTGCTCAACAAAATTGACCAGATCTCCATTGAAGAGCTGGACATCATCTACAAGGTGCCCCACTGCGTGCCCATCTCTGCCCACTCCCGCTGGAATTTTGATGACCTTCTGGAGAAGATGTGGGACTACCTGCACCTAGTGCGCATATACACCAAACCCAAAGGCCAGCTTCCTGACTACACATCTCCAGTTGTTCTACCTACTGAACATACTGCAGTGGAGGACTTCTGTTTGAAGATTCATAAAAGCCTCCTCAAAGAATTAAAATATGCTCTGGTGTGGGGTGCTTCAGTGAAACACAACCCCCAGAAGGTGGGAAAAGACCATGTCATGGAGGATGAGGACGTTATCCAGCTGGTGAAAAAGTAAAAAGACTCCTGATTGCTTAATTTTCTCATCACAGGAAATAGTCTGCTGCTCATGAAGACCCCTCTCAAACAtatccacgagaacatctgtgtCTTGTGGTTCTCAATTTTATTTTGGAATTTGAAAAACAGAAAAGAAAAAATATGAATGTCCATGTTGCGTTTACCTCTCATTTATGCCGACATGTGATTCATTAAATCCATCGAAGAGTATTATCCTTGAATCTCAAAAATATCAAATAAACACCGTAAATATGA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448052 lncRNA upstream 44348 35908309 ~ 35918853 (+) False G394885
TU448049 lncRNA upstream 44348 35910895 ~ 35918853 (+) True G394885
TU448047 lncRNA upstream 56983 35906011 ~ 35906218 (+) True G394883
TU448045 lncRNA upstream 60474 35902510 ~ 35902727 (+) True G394881
TU448043 lncRNA upstream 61771 35901208 ~ 35901430 (+) True G394879
TU448093 lncRNA downstream 11112 35977856 ~ 35983731 (+) True G394923
TU448130 lncRNA downstream 132629 36099373 ~ 36108885 (+) True G394958
TU448143 lncRNA downstream 153562 36120306 ~ 36121931 (+) True G394970
TU448227 lncRNA downstream 293407 36260151 ~ 36261227 (+) True G395041
TU448221 lncRNA downstream 315987 36282731 ~ 36288452 (+) True G395035
NM_001124311.1 mRNA upstream 2891 35930772 ~ 35960310 (+) True kcnn2
XM_021601250.2 mRNA upstream 2991 35930114 ~ 35960210 (+) False kcnn2
XM_021601251.2 mRNA upstream 2991 35930114 ~ 35960210 (+) False kcnn2
XM_036977367.1 mRNA upstream 100575 35824213 ~ 35862626 (+) False sppl3
XM_036977374.1 mRNA downstream 39462 36006206 ~ 36019354 (+) False slc20a1b
XM_036977375.1 mRNA downstream 40114 36006858 ~ 36019354 (+) False slc20a1b
XM_036977376.1 mRNA downstream 40669 36007413 ~ 36019354 (+) True slc20a1b
NM_001160643.1 mRNA downstream 66517 36033261 ~ 36034801 (+) False you2
XM_021601259.2 mRNA downstream 66519 36033263 ~ 36034806 (+) False you2
TU448046 other upstream 57420 35905112 ~ 35905781 (+) True G394882
TU445804 other upstream 1814500 34147474 ~ 34148701 (+) False G392776
TU444741 other upstream 2601860 33360957 ~ 33361341 (+) True G391805
TU444420 other upstream 2800221 33158826 ~ 33162980 (+) True G391513
TU443183 other upstream 3742668 32220181 ~ 32220533 (+) True G390393
TU448080 other downstream 193 35966937 ~ 36004829 (+) True G394910
TU448071 other downstream 66516 36033260 ~ 36034767 (+) True you2
TU448184 other downstream 236157 36202901 ~ 36206616 (+) True G395005
TU448219 other downstream 313556 36280300 ~ 36301290 (+) True G395034
TU449364 other downstream 998340 36965084 ~ 36965652 (+) True G396022

Expression Profile