RNA id: XM_036977390.1


Basic Information

Item Value
RNA id XM_036977390.1
length 3146
RNA type mRNA
GC content 0.47
exon number 19
gene id antxr1b
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36519405 ~ 36569643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgagagagggagtgtgtttgTCCTGGAACAGCTCTTCCTGATTCAGGCCAAGCAGCTCCACTTCCCGTCTCCCAGCACAGGACTGCTGCTGTGGAGGAGATGGGACGCTGATCCAGACTGGGAATATTTCATTCCTGGAATCTTACATTTTAGAGCATTGTGAGTTGCAGGCAGGCCATGCTTGCAGCAGAGATCTGCACACTGATGGCCATTCTGGTGGCAGGCACTGCAGGACAAAGCCCTGACAGGAGGGAGGCAGGGTCCTCCTGCTATGGGGGGTTTGACCTTTACTTCGTTTTGGACAAGTCAGGGAGTGTACAGCACCACTGGAATGAGATATATTACTTTGTTGATCATCTGGCTCATAAATTCATAAGTCCTCAGCTGCGGATGTCCTTCATTGTGTTTTCTACAGAGGGACGGATCCTGATGAAACTAACAGAAGACAGggaGCAGATTCGGGCAGGCCTGGAGGAGCTCCGTATGGTGCACCCTGGGGGAGACACTTTCATGCACAAAGGGTTCCAAAGGGCCAGTGAACAAATCTACTATGCTGGAGACAGTTTCCGTACAGCCAGCGTCATCATTGCCTTGACAGATGGCGAACTGAGGGAGAATCAGTTCgatctggcagagagagagGCCGGCCGATCGCGTCAACTGGGTGCCTCTGTCTACTGTGTGGGAGTAAAAGACTTCAATGAAACCCAGCTTTGGACAATAGCCGACAGTAAGGACCATGTTTTCCCTGTAAATGATGGGTTTGAGGCACTGCAAGGAGCCATTGATTCCaTCCTGAAGAGATCATGCATTGAGATACTGGCAGCAGAGCCCTCTAGTATCTGTGCAGGAGAGTCCTTCCAGGTGGTAGTGAAAGGAAATGGTTTCTCACATGCCCGTGAGGTGGGGAAGGTCCTTTGTAGCTTCCGCATCAATGACACTCTCACTTTGATGAAAAGGCCATTGGTAGTGAGAGACACCTACCTTCTGTGCCCAGCTCCCATATTGGAAGAAGAAGGGACGGAAGCTACCCTCCACGTCAGCATGAACAATGGCCTGAGTTTCATATCTAGCTCCGTCACCATCACCACAGTCAGCTGTTCTGATGGGACGTTCTTGGCCATAGCTCTGCTCatcctgctgctcctgctgacgcTGGCTCTGCTCTGGTGGTTCTGGCCTCTCTGCTGCACAGTGATCATCCACGAGCCTCCACCTCCAGTAATGGAGGACAGCTCAGATGAGGATGAGGACGGGTGTCCCAAGAAGAGGTGGCCCACTGTGGATGCCTCATACTACGGTGGCCGAGGTGTTGGTGGCATCAAGAGAATGGAGGTCCGGTGGGGTGACAAGGGTTCCACTGAGGAGGGGGCCAAACTGGAGAAAGCCAAGAATGCCCGTGTCAGGATGCCAGAGCAGGAGTTTGACATGCCACTAACACACACTTTCAACAATGGCATTCACAAACCAATCAGTCCCCAGAAGTGGTACTCTCCTATAAAGGGCAAGCTGGATGCTCTGTGGGTGTTTCTGAGGAAAGGCTATGATAGGGTGTCTCTGATGAGACCCTATCCTGGAGACAAGGGCAGGTGCATTAGCTTCACCAGGGTGAAATCCTACCCGGCTCCTCGTTATCCAATCTACCACCAGCCCTCAACGCCAATCTACAGTCTGCCTCACACCTACAGTCACGCTTCCTCACATGGCAACCTCTCCCACATGCCCCCCTCTCCCACCTCCACTCTTCCACCCCTGCCATCCACTCCCCCTCCGTCCTGCATCACCCCCCCTCCTTACACCCCCCATCCAAACCAAGCTCTGCCCCCAACTTCTGTAAGTCCTCCCCTACCTGCTGCTCCACCCAACCCTCCACCTGTTTTTTCTCAGGCCCCACCCTCATGCAGAGCCCCTCCCCCTTCCCGCCCTCCCCCACACCCATCTGACCAATTTCTCTGAGGaaaaagaaaggaaggaaggccaATGCATCTGTTAAAGAACTGAGCTGCAAGGACCCTGAGGGCCCCTGAAAATGTCCCGAATACTGTGCCTTTCTCTTCTCCACCAATCCAAACCACTATCAACATATTGACAGGCAGGACAGCAAGTCCAGCTCTACTTCACTCAACGGTTCAGAGAGAAGCTGAGCAATTGATCTGTAAAACAATGTTCCATTAGATTTTCCATGTTCTCTATTCTAACTGATCAGGAAGTTGTATCATATTTTTTACTGTACAAGACTACAGTGAAGTTAATACCAACTCTTTACTGCTTTGcttaatcaatggaaacagaatatTGACATCTTTAGCAGAAGGGATAAACAAAGTATTTCACAAGTTAAAAGATCAATGGCTCAGCTTTCAACTCTGTCTTTTATGTGTTATATAGGTACATCTTACATGTTGATTGATACAAACCTATGTGTATTATGGATGAATCACTGAATGAAATTTTTTATAAATCAATCAATAAGTATATTGCAAGGAATGACAAACATGTCAAACACATTAGCAATGAGGAAAACCTCTGACTGGGGAAGAACGGATGACTTTATTTGCTTGTTTACACAGAAATCATGTGAAGAGTTTAAGCCAAAGGAATGAAAAGCATGTCCTGTGGAATGTTAAATGCACAATACGTGATTTCAACAGCCAGATCCTGCTACTTGAGCTGATGGATGGAGCTTATTGATATTTTGAACCTTTTACATTGTTACAAAAAAACAGTAACAACCTTAGATATTGGGTTATGACAGTTGTACTGAGCTCATACGGTATTATTGTAATATATGTCATTAATTCAAATTATCATTGGAAATCTCCAAATCTGACAGATTATGCTTTTAAAATCAGCATGGCTGACCTACCATTGGCCAAATCAGGGACCAGCCAGAGCACACTGACCTTTTGACGTGACCTTTGGCTGTTGTTAAATGGGGAATTTTGGTTGTGTAACCATTCCTACAGCAGAACTAGGAATGAGGATCTCTGAATCCACTAGGGTCTAATTCCATTTCCAATCCAGAAAAGTGTGTATTGAATGTGCTTACTGAGTACCTCCAATTAATGTATAGAATGTACAGAATGTATCCAAAACCAGCCAGGCCTTTTTTTCAGATTgtaataaaatattgaatttcaGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448910 lncRNA upstream 11127 36508033 ~ 36508278 (+) True G395641
TU448390 lncRNA upstream 35184 36483995 ~ 36484221 (+) True G395184
TU448369 lncRNA upstream 62952 36456253 ~ 36456453 (+) True G395165
TU448361 lncRNA upstream 77649 36441435 ~ 36441756 (+) True G395157
TU448349 lncRNA upstream 89071 36425712 ~ 36430334 (+) True G395145
TU448945 lncRNA downstream 4096 36573739 ~ 36577200 (+) False G395672
TU448949 lncRNA downstream 4096 36573739 ~ 36576507 (+) False G395672
TU448951 lncRNA downstream 4096 36573739 ~ 36576425 (+) False G395672
TU448954 lncRNA downstream 4096 36573739 ~ 36575409 (+) False G395672
TU448950 lncRNA downstream 4281 36573924 ~ 36575409 (+) False G395672
XM_021602648.2 mRNA upstream 49566 36458802 ~ 36469839 (+) True LOC110523708
XM_021602633.2 mRNA upstream 143017 36371366 ~ 36376388 (+) True LOC110523704
XM_036977378.1 mRNA upstream 399300 36085124 ~ 36120105 (+) False LOC110523692
XM_021602613.2 mRNA upstream 399300 36114672 ~ 36120105 (+) True LOC110523692
LOC110523693 mRNA upstream 463370 36042518 ~ 36056035 (+) True LOC110523693
XM_021602650.2 mRNA downstream 37759 36607402 ~ 36614580 (+) True LOC110523711
XM_021602653.2 mRNA downstream 70013 36639656 ~ 36645198 (+) True LOC110523714
XR_002473377.2 mRNA downstream 80305 36649948 ~ 36651750 (+) False LOC110522857
XM_036977398.1 mRNA downstream 227720 36797363 ~ 36805188 (+) False ggt5b
XM_021602658.2 mRNA downstream 227722 36797365 ~ 36805752 (+) True ggt5b
TU448219 other upstream 218115 36280300 ~ 36301290 (+) True G395034
TU448184 other upstream 312789 36202901 ~ 36206616 (+) True G395005
TU448071 other upstream 484638 36033260 ~ 36034767 (+) True you2
TU448080 other upstream 514576 35966937 ~ 36004829 (+) True G394910
TU448046 other upstream 613624 35905112 ~ 35905781 (+) True G394882
TU449364 other downstream 395441 36965084 ~ 36965652 (+) True G396022
TU450033 other downstream 839558 37409201 ~ 37410899 (+) True m17
TU450409 other downstream 1349051 37918694 ~ 37921236 (+) True srsf9
TU452179 other downstream 2744691 39314334 ~ 39317715 (+) True LOC110523777
TU452856 other downstream 3192473 39762116 ~ 39765843 (+) True G399169

Expression Profile