RNA id: TCONS_00030957


Basic Information

Item Value
RNA id TCONS_00030957
length 830
RNA type processed_transcript
GC content 0.47
exon number 5
gene id XLOC_015477
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26498446 ~ 26501900 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTAGCCGGCGCCTGAGAATGGGTATGTGTCTTCCGATTCTGATCGCTGGAACAATCCGTCTTCATCTTCTCTATCCGACGAGGTTTATAGTTAATCTGACTTTATTTTGTATTACAGAAGTAATATTTAAAAGATTTAGGTGAAAATCGCATGATATAGTGTATTTTAAAACAGTTTGcgtaaataaactgtaaagtggCTGGATACGTTGCTCAAGATGGCTGCGCGCATGCGAGAGTACACTTTCACAGCGTGTAGAGAACAGACGAAGCTGTAGTTACAGGGACGAGTACAAGGCAAGCTGTAAATATAAAAGTACTGTGTATGTATCTCAAGGGATAACTGGCACAAACGCCGCAGGACCGGTGGCAAACGCAAGCCCGTCCACAAGAAAAGGAAGTATGAGCTCGGGCGTCCTGCAGCAAACACCAAGATTGGACCTCGCCGCATCCACACAATAAGAGTCCGTGGTGGAAACAAGAAATACCGTGCCTTGAGGCTCGATGTGGGAAACTTCTCATGGGGGTCAGAATGCTGTACCCGCAAGACCAGGATCATTGATGTGGTCTACAATGCTTCAAACAATGAGCTGGTGAGAACCAAGACCCTGGTGAAGAACTGTGTTGTTCTGGTGGACAGCACTCCTTACAGACAGTGGTATGAGTCTCACTATGCCCTCCCACTTGGCAGGAAGAAGGGAGCCAAACTGACCCCTGAGGAAGAGGAAATCCTGAACAAGAAGAGGTCCAAAAAGGTCCAAAAGAAGTTTACTTTGCGCAGAAAAACAGCCAAGATCAGTCCTCTGCTGGAGGAGCAGTTCCTGCAGG

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8626 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS8 (ribosomal protein S8).

Ensembl:

ensembl_id ENSDART00000141010

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030954 lncRNA upstream 3490 26494300 ~ 26495044 (+) True XLOC_015476
TCONS_00030953 lncRNA upstream 4389 26491759 ~ 26494145 (+) False XLOC_015476
TCONS_00030952 lncRNA upstream 15143 26482897 ~ 26483391 (+) False XLOC_015476
TCONS_00030948 lncRNA upstream 207844 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00033544 lncRNA upstream 331115 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00033549 lncRNA downstream 12314 26513608 ~ 26519549 (+) True XLOC_015478
TCONS_00033550 lncRNA downstream 91401 26592695 ~ 26595418 (+) True XLOC_015479
TCONS_00030966 lncRNA downstream 146179 26647473 ~ 26652271 (+) False XLOC_015481
TCONS_00030972 lncRNA downstream 175823 26677117 ~ 26680212 (+) True XLOC_015482
TCONS_00033551 lncRNA downstream 219774 26721068 ~ 26741627 (+) False XLOC_015485
TCONS_00030951 mRNA upstream 3490 26479676 ~ 26495044 (+) False XLOC_015476
TCONS_00030950 mRNA upstream 3492 26479676 ~ 26495042 (+) False XLOC_015476
TCONS_00030949 mRNA upstream 54031 26303627 ~ 26444503 (+) True XLOC_015475
TCONS_00030947 mRNA upstream 197915 26288301 ~ 26300619 (+) False XLOC_015474
TCONS_00030945 mRNA upstream 214289 26240631 ~ 26284245 (+) True XLOC_015472
TCONS_00030964 mRNA downstream 103479 26604773 ~ 26611033 (+) True XLOC_015480
TCONS_00030965 mRNA downstream 146178 26647472 ~ 26653148 (+) False XLOC_015481
TCONS_00030967 mRNA downstream 146252 26647546 ~ 26649283 (+) True XLOC_015481
TCONS_00030968 mRNA downstream 154450 26655744 ~ 26680084 (+) False XLOC_015482
TCONS_00030969 mRNA downstream 154989 26656283 ~ 26665935 (+) False XLOC_015482
TCONS_00030946 other upstream 211029 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030940 other upstream 458928 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030908 other upstream 1652535 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 1957769 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 1957809 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030963 other downstream 474 26501768 ~ 26501900 (+) True XLOC_015477
TCONS_00030971 other downstream 166386 26667680 ~ 26672847 (+) True XLOC_015483
TCONS_00030976 other downstream 499248 27000542 ~ 27010345 (+) True XLOC_015486
TCONS_00030980 other downstream 819720 27321014 ~ 27324181 (+) True XLOC_015489
TCONS_00030985 other downstream 893546 27394840 ~ 27400917 (+) False XLOC_015492