RNA id: XM_021603426.2


Basic Information

Item Value
RNA id XM_021603426.2
length 3872
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110524094
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56585208 ~ 56593281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACGGGCCATAGACCGGTGCACCACGGCTCAGGTTAATAGAACTCCCTCACTTGCAGTCGGATCGCCCGCATGTAAACATGGCTTTAACGCCTATGTAAACAGAGCACAGGGCTCCTCGTTTTGGACAGTCAACAAGTCAGGCATGTCTCTCGAAGGTGTATAGGAGTTTTAGACATTAGTAGTACAGTAAATTATTTAGCAATATGTCTATGGAAGATCCGTTCTTCGTCGTCAAAGGTGAGGTCCAGAAGGCGGTGAACACTGCTCAAGAGCTGTACCATAGATGGAGTGAGCTGCTGCTGGATCCCAGTGGTGCTTCCAAGGAGGAGGTGGATTGGACCACCAATGAGTTGAGAAACAGTCTGCGGTCCATCGACTGGGACCTGGAAGATCTCGATGAGACCATCAGTATTGTTGAATCGAACCCTAAGAAGTTCAATCTGGACACAGTGGAGCTGTCCAAACGGAAAGGCTTCATCACAAGCACCAGACAAACTGTTAAGGAAATGAAAGACCACATGTCCAGTCCGACAGCCTTAGCCATGTCCGACAAGAAAAACAGACAGGCTCTGTTAGGGGACAGTGGGTCTCAAGGCCCAATCTGGCAACCGGGACTCGACAAATATACCCGCCTGGACCAAGAGCTACAGACGGCCAACTCCCAGTTCATCGAGGAGCAGCAAACCCAGCAGCAGctcatGGCAGAGCAGCAGGATGACCAGCTGGAGCTGGTGTCTGGGTCCATCGGGGTGCTGAAGAACATGTCTGAGAGGATTGGCATGGAGTTGGATGAACAGACAGTTATGCTGGATGACTTCTCCCATGAGATGGAAAGTACCCACTCCAGACTGGACAACGTCATGAAGAAGCTGGCCAAGGTCTCCAACATGACCACTGACCGGCGACAGTGGTGTGCTATTGGTATTCTACTGGCCATTCTGTTTGTGGTCGTCATTCTCTTCTTCATCCTGTGATGACCAGACCGTCCACCACGACACACTGACCCCCTCACCCCTGTCTCCGTTTGACCATAGGGATGGACTTTACATGGTGTTGGGGAAACCATCCAAGGTTTCCATTGACATAGGGAGATGGCTATCTAACTCCGACCCCCTTTTTACTTCATACGCTGTATATACAGTGATGCTTCTGTGGCTGCTGCAGTTTCCTCTCAAGCAACGTTCTCAATCGTCGTTTCAGATACCTGCATTCAACTTAAACCTCCCTTGGCGTGAAAGATTTAGTTTCTGTGCATGCACAATTttaggtaggatgtgaatactaATCCTGAAAATGTTTTACAGAAAACTGTTTGAGGTAAACCAGGGTAGTTCAAACTCCTTGTGGCATTTTAGTGTTAATATTCCGAATATTATGTATGAAGAAGACTAATCATTAGTGTATTTAGAGGGCCTTGTCTGTCGTTTCTCACTGAAAACCCCTACGGCTACCATGGTCAtagttttttaaaatatattttgttttgtcgtgCACTGACTGTGTAACAGGTTTATACAAGTATATTCAACTTTATATATATAAACGTAGTTGGTCATAGTTAAAACAAAACACTGACGTAACAAGGAAAATTATATATTGCTAAGCGGGTAGACGTATCACTAACCACACTAAAATGGATGAACTTAATGTTATTGTTTTTAATTCATTTATGTTCTCTCATTTTGTACTTAATGTATTTTTGGTATTTGCTTATACACTATCAACAGGTGTTTAACACCCGCCTGTGAAATCAAGTCACTTCCTGCAATACTGAATGGAATGGAGCAAAACCATATACTTTTGTATCTCGAACCGGGCTCAAGCTTGATTTTAATGTCTCAATGCGAGCACTCTAATTTTGTGCGAAAAAGTTTTCCTCAAGATGTCCTTTGCGTGCATGTCTTCATATGTCTGGTGTCTTTTAGCCAGTGTTTCAGCCCTTCTAAAGACTATATAACATGCTTATAATCAGTATATGATACGCCCCCAGGCACTTCATAAATACTTGGTACAATTCAATTGGCAAGCTAGTGTCAACAGACCTTAAGTTGATTATCTAAGCTACTAAGCGTCATGCATTTGTTTTTGAATGTGTTATGCAGTTTTTACAAGACCCTTATACCAAAGTGTTAAGTGTTCAACTGAAATGCTAATTGAGAAGCCTGACCTGCTTTCCCCCTGCCAGGAATTAGTGTTAAGGTTTATCAGTGTTACATGAACATGATGTTGGAATAAGGGGAAGGGACTGACTGAGTCACACCTGGgctgtattcattagggcacaccgtagcaaaacattttgcaaaaaAATTGTGTTTCTTATTGGAGATGTTCAAGGTAGTCCCTGTTTAAGTCAGTTTTCTGTTTGTTGCGTAATGAATATGGCCCTGGTAGTTGCTGTGCTCTGCATAGCCAGTGCCTTAGGctgatactgtatgtatgttaTGCTGGGTCTAGAATGGTTCATTTTGGTCTCGCTTCCCAGTTCCTGCCCCCTACCTTGAAATTACATTTCAAAACGGTAACCAGAGTCCCAGGATGAGTCGTAAGTCAATGGTTGACTGAATATGCaggcatgtttttttttcttctgttttcaGTGTGTTCCTATACAGTTCAAGGAGAATGATACTGTTGTGTTAGCCTGgttaccagtctgtttagctaacgttccactccttgtactctgtgtcatatGCCAAAGATGTATGTTTAGCATGACAGGAGTGGAAAAATGACCAAACAGACTGGTGTTATGTTAATTATCGTAGAAACCTGGTTACAGACTTTGATTCAATAGGTCTCCACTCGTTTGAGGACTTAATGTGAACATAACACATTAATTAACTATTTTAGGTTGAATGTCATATCAATCCACAGACCCTGAAGTCTTTCTGGGAAATCAAGACAGTAAAACCATACATAAGAGGAATAAGGGTATTGTGATTGTACTACTGTATGAAATATAATGGACACTAGTGATCAAGGTTTTCTCTATGGCATTCTAATTCTGATCGTTTTTCACGAATCGGTCTTGACTGATCAGATGATTTTTGGAAAAGGATCTAATGTGAGTGGTCAAAGACCAATTGGTAGAGCAAAAAATCTTAACtggactgcctgtgtaaacgcaaccTGTGAGTCTCAAAAGTTCTGAAAACACTCCTTTCAAAGGTCTTATAAAGTTAGCAAAATATATTGTATGTCTTTGTCTTTTATGTCTTTGTCTTTTATGAGTTAACACTACACGTTCACTGTACGAGAAATACAGTATTTCATCAGTGTGTCTTTAGAGGTAGAAAACATTTTAACAATTTGTTTCTCAGTTTACTTAAATGTTTTCATTTTTTCACTTATCGGAAGTGTTATGTCTGGTAGGAAGAGTTTGACTTGGAGTTTACAATATTTGCATTTATTTCAGATTATGGACAATTTGAAGCATGATGGTGACCTAGACAATTATGTACCATCTCAAAATCACTTGTGTTTGTCACAAAAAcaaagtgtgtgtaaactttgtGAATCCTTTTGCAATGCTGTATTACGATACAAAGTACCTTGAGCATTAAATACTGTACTTATTGCGCAACCAAGTCCCTGGTGACAGTGATGGGTGACAGGTGGACGAGATGTTTGTGGAGAATGGGTACAGTCCATGGCATTGTAAGTTatggtgtgtttttgtttgtgtgaaACTGTGTGTTCATGCTCCTGGAGTGTGTGAAAATACTTTTTACCCTTGAACTGTTCCCCTTGACCTCCATGTCATCATGGCTGAGCATATGTAGCTGAAGAGTCCTGAAAATAAAAGGATGCTGCAAAGATTCACTCTGTTTCAGCTCATTCCAATAAAATGATGTGATCAATTTG

Function

GO: NA

KEGG:

id description
K08498 STX6; syntaxin 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473780 lncRNA upstream 107131 56477763 ~ 56478566 (+) False G418007
TU473781 lncRNA upstream 107131 56478117 ~ 56478566 (+) True G418007
TU473760 lncRNA upstream 112562 56471045 ~ 56473135 (+) True G417989
TU473762 lncRNA upstream 119836 56460784 ~ 56465861 (+) True G417991
TU473752 lncRNA upstream 149716 56435617 ~ 56435981 (+) True G417983
TU473847 lncRNA downstream 697 56593978 ~ 56594366 (+) True G418063
TU473861 lncRNA downstream 20925 56614206 ~ 56616854 (+) True G418076
TU473878 lncRNA downstream 40572 56633853 ~ 56667606 (+) True G418087
TU473972 lncRNA downstream 232858 56826139 ~ 56826512 (+) True G418176
TU473974 lncRNA downstream 234390 56827671 ~ 56827880 (+) True G418178
XM_036977911.1 mRNA upstream 60109 56506580 ~ 56525588 (+) False LOC110524091
XM_021603431.2 mRNA downstream 38515 56631796 ~ 56647090 (+) False stil
XM_021603432.2 mRNA downstream 38515 56631796 ~ 56647090 (+) False stil
XM_021603433.2 mRNA downstream 38515 56631796 ~ 56647090 (+) False stil
XM_021603434.2 mRNA downstream 38515 56631796 ~ 56647090 (+) True stil
XM_036977915.1 mRNA downstream 65640 56658921 ~ 56681288 (+) False rc3h1a
TU472519 other upstream 1260426 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 1972555 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 1972555 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 2235082 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 2255217 54330080 ~ 54330480 (+) True G415809
TU473866 other downstream 24609 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 132904 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 330643 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 350557 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 772083 57365364 ~ 57367337 (+) True LOC110524119

Expression Profile