RNA id: XM_021603505.2


Basic Information

Item Value
RNA id XM_021603505.2
length 2166
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110524142
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58199387 ~ 58205370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTAGACTGCCATTCAACTCCCTCAGCTCTAAGGGTGGTTAGTTTCATTATTGAGCAAACATACTTGTTCAAACAGTGACTCGCCAGCTCCAGGCATTGAATATGCACGGAATAAAAGATGCAGATCTCCCTGGCCATTCACCAACATCCTGCTTTCAAGGATGTATTAATGTGGGCATGCTGTCAAGTTGACCATCACGTCTATACCTCTAGGGAAACATGGCGGGAGCAACGAGTGTCACTTTATTTCTACCTTTTGTTTTGGTAGCCGTCACTCTAGGGTCCACTGGAGCCCCAAACTTGTCTTCATCGAAGGCTACCAACAAGTCTACCCCAACATTGTCTAGCATCACCACAGTGGTCCCTGCCTCAAAAGCCAGTATAACAAGTCTCATAGTCAGTAAAACACTTGATTCAGCTCCTACTGGTAACACTGAAGTCCCATTGGAATCATCACCGACAACTGAGCGCTCCCAatcctctcagacactgactccATCAAAAGCATCCGATGGTAGCACCACCTCTACAGGTTTTACAGCTGACACTTCTACAAATCAGACCCAAACTGGAACAACTTCTCATGACTCCACATCCTCAAACTTCTCGTCAACTTTGTCACCAAACTCTGATTTTACCACAGGGAACATGAGCTCAAGCACAGCTTTACAAAGTGATGGGAGCCATGACTTATCAAGGAGTCCGGGTCTTGTAGCAGTCCTATGCATATTTTGCATCTGTCTGGGTCTTCTACTGGCTGTTGGGATTGCAAAGTTCATTAATTCCAGAGGTTCAAAGTTTGAGAGGCTCGAAGATGTGCCAATGGGCAAGATGAATGAAGAGTCTCCATTTGCCCGTTCTCCAACAAAACAATTCTGAAAGATAACACATCATGAGACAAAGCCATTGACCCAGAACTGATAGAATGTAAATCAGTCTTTTGTTTGGGTTCAGATGGTGCCGTTCATGACATGTCATCCACCATCATGTTTTTTTCCTGTctttgtttgttttgtctggCTGCTGGAAAGTGACAAATGTTTGAAAGAAATCAGTATAGCCCAAGGCTACAATCAACCCTGTGATGTAGTACAGAATATCTACTCTGAGGTTGGTCAGCAGCATACTAAAGTTGATCATTGGCCCAAGGTGAAGTACTATTCATTCACAGATGGATGGATGCGTCAAGAACCATAATGTAGAAGATGCACAGACAATGGCTGCgcttacacaggcagcccaattctgcaCTTTTGTCCAATTATTGCAAaaagatctgatctgatctgattggtcaaaagcccaattattggcaaatgTACAGAATTGGGTTATCTGGAATTCTACGTCTGGTAGAAATGTGTTTGGATAAGGAAAGTTTCCTGAGAGAAACTCAAAAATGTTTATTGCCTATTGCACATTGTTTATTGCATATTGCCCGATGATCTTCTGAACTTCCCAATACCTTTTtgatgcatttcagtcacttcaaaccaTACTTCCATCACATTTGAATAATGTCAAAAGTACTGTCcaactgatttgtaatagactgtcatagcTCCAATTTAAAAAGTAAACATTAGCTGTTGATTACATCACTTTTTTTTATCTAATGGGGTTAGCAGCCTAAAAACTTTGGGAAACCATACTCTACCCGCTGTTGGTTCTTTTGACTTTAGGAATGCCAGACAATATATCCGCAGGAAAGTATAATCCAATAAAGTTACCAAAGCACTGGTAGTGCGTTCCGATTTCTATCACCTGAAGCATGCACCGAACTATGTAAACGCGTGCATGAGCTTGGCAAGTATCATGCCTGTATTTGCATCTTGTGGCATGCTTCAAGTGATTATAGAATACTTAACGCTCTACCAGCGCTTTGAAACGTTTATTTAATTATACTTTACTGTGGATGTCTCACAGTCCTACCTGCAAAAAGATGCATGGACAACCGGTAAAGTATTTAAAAATAAACCGTTTACTCCAAACAGAAGACGCAAACgatagtttctattggacaattcGGGTATTCGTTTCGTTCCTTTTGCACTGTTTGCTTCCGTTTTGTTTTAAATGTTAAACTGTTTCTATAATGAATACGcccctgtgtaaatgcagccaatgTGTCAGGTATCATTAGAAATAAAGCTGCTCCAAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475962 lncRNA upstream 45547 58151976 ~ 58153840 (+) True G419999
TU475958 lncRNA upstream 57279 58141889 ~ 58142108 (+) True G419995
TU475927 lncRNA upstream 74648 58124669 ~ 58124739 (+) True G419975
TU475948 lncRNA upstream 88701 58109995 ~ 58110686 (+) True G419989
TU475947 lncRNA upstream 88982 58109995 ~ 58110405 (+) False G419989
TU475991 lncRNA downstream 494 58205864 ~ 58210110 (+) True G420026
TU476025 lncRNA downstream 40620 58245990 ~ 58246538 (+) True G420055
TU476032 lncRNA downstream 63749 58269119 ~ 58269426 (+) True G420062
TU475990 lncRNA downstream 167750 58373120 ~ 58373991 (+) True G420025
TU476067 lncRNA downstream 174546 58379916 ~ 58380305 (+) True G420093
XM_021603503.2 mRNA upstream 39253 58158521 ~ 58160134 (+) True LOC110524140
XM_021603502.2 mRNA upstream 74989 58120065 ~ 58124398 (+) True LOC110524139
LOC110522977 mRNA upstream 113118 58084721 ~ 58086269 (+) True LOC110522977
XM_036977954.1 mRNA upstream 168493 58028761 ~ 58030894 (+) True LOC110524136
XR_002473545.2 mRNA upstream 292727 57874805 ~ 57906660 (+) True LOC110524134
XM_021603511.2 mRNA downstream 106962 58312332 ~ 58370090 (+) False LOC110524143
XM_036977957.1 mRNA downstream 106965 58312335 ~ 58370090 (+) False LOC110524143
XM_036977958.1 mRNA downstream 121706 58327076 ~ 58370090 (+) False LOC110524143
XM_021603512.2 mRNA downstream 132469 58337839 ~ 58370090 (+) True LOC110524143
XR_005051769.1 mRNA downstream 196059 58401429 ~ 58404889 (+) True LOC118964627
TU475377 other upstream 299739 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 832050 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1241222 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1274211 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 1469566 56726185 ~ 56729821 (+) True G418119
TU476101 other downstream 207753 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 737358 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2488887 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3516167 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3900153 62105523 ~ 62105872 (+) True G424079

Expression Profile