RNA id: XR_005051804.1


Basic Information

Item Value
RNA id XR_005051804.1
length 2524
RNA type mRNA
GC content 0.41
exon number 32
gene id LOC110524154
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58579542 ~ 58620188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttccgtttaagaaacgttttgcaaccgAATCGGCGTATTGAATTCGCACTAGGATTACACTTCAGCCATTCGACAATTTTTTACGATTTTCGCGGAAGTATAGCGCCTGTGTTGTGGACAAAATGATCGGGGATCTCTTGATATTCGGGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTATTGTTTGGATAGTGATCAACTTCGTTTTTGGATTGGGGGCCCCTGcacaaaaaaaataacttttttgagTTGAGATTCATGTCGGATCCTGTGACCTGCGACCATTATGTGCAATATCGCAATATTTTTGCGCTAGTTAGTTGTACCTGCATCAAAACTACAGTATTTTATCTTCATAGCATTTAgaaatagggagccaattggtTTTTCAgcccttttatttccatgactgacctAAACTGCTTCTCATGGTTCTCTCGTCACACTGCAGCGGATATATGGTTAGCAATAtatttggaacatcgaatcgcagtacatattgtatcggcatctaagtatcgtgataatatcgtatcatgaggtccctggcaattcccagccctattgCTAACCTGTTATCTTCAGTCCTCATTTTCTTCTAAAACTTGTGAACAGAATGAGAACCATTTGACATGTTTGATGTTTGTCTTACTAAGGCCTTCTGATGTTaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476542 lncRNA upstream 922 58578104 ~ 58578620 (+) True G420511
TU476525 lncRNA upstream 21094 58557388 ~ 58558448 (+) True G420495
TU476500 lncRNA upstream 85869 58490968 ~ 58493673 (+) False LOC110524147
TU476501 lncRNA upstream 85869 58490968 ~ 58493673 (+) True LOC110524147
TU476488 lncRNA upstream 102137 58477182 ~ 58477405 (+) True G420465
TU476549 lncRNA downstream 2827 58619351 ~ 58620032 (+) False LOC110524154
TU476548 lncRNA downstream 2945 58619469 ~ 58620032 (+) False LOC110524154
TU476547 lncRNA downstream 3053 58619577 ~ 58620032 (+) False LOC110524154
TU476550 lncRNA downstream 3053 58619577 ~ 58620188 (+) True LOC110524154
TU476567 lncRNA downstream 4091 58620615 ~ 58643531 (+) True LOC110524153
XM_021603533.2 mRNA upstream 40106 58512929 ~ 58539436 (+) True LOC110524150
XM_021603534.2 mRNA upstream 40468 58512929 ~ 58539074 (+) False LOC110524150
XM_021603532.2 mRNA upstream 73609 58500105 ~ 58505933 (+) False LOC110524149
XM_021603530.2 mRNA upstream 73609 58500107 ~ 58505933 (+) True LOC110524149
XM_036977960.1 mRNA upstream 88317 58484043 ~ 58491225 (+) False LOC110524147
XM_021603538.2 mRNA downstream 3994 58620518 ~ 58646110 (+) False LOC110524153
XM_021603539.2 mRNA downstream 3994 58620518 ~ 58646110 (+) False LOC110524153
XM_021603541.2 mRNA downstream 30636 58647160 ~ 58656842 (+) True LOC110524155
XR_002473549.2 mRNA downstream 45386 58661910 ~ 58669974 (+) False LOC110524159
XM_021603542.2 mRNA downstream 57734 58674258 ~ 58699892 (+) False LOC110524157
TU476101 other upstream 162766 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 679894 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1212205 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1621377 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1654366 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 326204 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2077733 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3105013 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3488999 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3666628 62283152 ~ 62306937 (+) False LOC110524265