RNA id: XR_005051789.1


Basic Information

Item Value
RNA id XR_005051789.1
length 2876
RNA type mRNA
GC content 0.41
exon number 35
gene id LOC110524154
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58579542 ~ 58620188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttccgtttaagaaacgttttgcaaccgAATCGGCGTATTGAATTCGCACTAGGATTACACTTCAGCCATTCGACAATTTTTTACGATTTTCGCGGAAGTATAGCGCCTGTGTTGTGGACAAAATGATCGGGGATCTCTTGATATTCGGGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGTGTGATGCATTGTGGTGCATTAAAAAACCTCACCTCAGGAAACTTCACAGAGTGACTATTCATGAAAATGAAAGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTGACCTTACTCATGAACACTGGTGCTGTGTAAACTTCAAACTTAAGAAAAAGGAGTCACAAGGACAATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGAGAGTTCCTCCAGAGTCTACGCTACTTCCGGATTTTCATTGCCTTATGGAACATATTCATGATGTTTTGCATGATTCTATTGTTTGGATAGTGATCAACTTCGTTTTTGGATTGGGGGCCCCTGcacaaaaaaaataacttttttgagTTGAGATTCATGTCGGATCCTGTGACCTGCGACCATTATGTGCAATATCGCATTATTTTTGCGCTAGTTAGTTGTACCTGCATCAAAACTACAGTATTTTATCTTCATAGCATTTAgaaatagggagccaattggtTTTTCAgcccttttatttccatgactgacctAAACTGCTTCTCATGGTTCTCTCGTCACACTGCAGCGGATATATGGTTAGCAATAtatttggaacatcgaatcgcagtacatattgtatcggcatctaagtatcgtgataatatcgtatcatgaggtccctggcaattcccagccctattgCTAACCTGTTATCTTCAGTCCTCATTTTCTTCTAAAACTTGTGAACAGAATGAGAACCATTTGACATGTTTGATGTTTGTCTTACTAAGGCCTTCTGATGTTAAGAGCATTCAGACTTAATTGTATCATTGCTTTGTTGCATACTTTTGTCTATGATCTAGTTTTGTATAATAAATCTTTACTCTAAAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476542 lncRNA upstream 922 58578104 ~ 58578620 (+) True G420511
TU476525 lncRNA upstream 21094 58557388 ~ 58558448 (+) True G420495
TU476500 lncRNA upstream 85869 58490968 ~ 58493673 (+) False LOC110524147
TU476501 lncRNA upstream 85869 58490968 ~ 58493673 (+) True LOC110524147
TU476488 lncRNA upstream 102137 58477182 ~ 58477405 (+) True G420465
TU476567 lncRNA downstream 582 58620615 ~ 58643531 (+) True LOC110524153
TU476583 lncRNA downstream 49483 58669516 ~ 58669975 (+) True LOC110524159
TU476603 lncRNA downstream 59553 58679586 ~ 58679864 (+) True G420545
TU476665 lncRNA downstream 182861 58802894 ~ 58803093 (+) True G420606
TU476667 lncRNA downstream 183949 58803982 ~ 58804208 (+) True G420608
XM_021603533.2 mRNA upstream 40106 58512929 ~ 58539436 (+) True LOC110524150
XM_021603534.2 mRNA upstream 40468 58512929 ~ 58539074 (+) False LOC110524150
XM_021603532.2 mRNA upstream 73609 58500105 ~ 58505933 (+) False LOC110524149
XM_021603530.2 mRNA upstream 73609 58500107 ~ 58505933 (+) True LOC110524149
XM_036977960.1 mRNA upstream 88317 58484043 ~ 58491225 (+) False LOC110524147
XM_021603538.2 mRNA downstream 485 58620518 ~ 58646110 (+) False LOC110524153
XM_021603539.2 mRNA downstream 485 58620518 ~ 58646110 (+) False LOC110524153
XM_021603541.2 mRNA downstream 27127 58647160 ~ 58656842 (+) True LOC110524155
XR_002473549.2 mRNA downstream 41877 58661910 ~ 58669974 (+) False LOC110524159
XM_021603542.2 mRNA downstream 54225 58674258 ~ 58699892 (+) False LOC110524157
TU476101 other upstream 162766 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 679894 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1212205 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1621377 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1654366 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 322695 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2074224 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3101504 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3485490 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3663119 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile