RNA id: TU476527


Basic Information

Item Value
RNA id TU476527
length 260
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC110524154
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58579542 ~ 58620188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGAATTCGCACTAGGATTACACTTCAGCCATTCGACAATTTTTTACGATTTTCGCGGAAGTATAGCGCCTGTGTTGTGGACAAAATGATCGGGGATCTCTTGATATTCGGTGGTGTAACTACTGGAACTTTACACCCtttttttgcaacaaaaaaaatatgggTGAGGTAGGCAAGAATTTCCTTTATTTTCCtgcatcagacctgcctaattctcacttgaaacactttttgtgtttaataggcaAAAATCACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476542 lncRNA upstream 960 58578104 ~ 58578620 (+) True G420511
TU476525 lncRNA upstream 21132 58557388 ~ 58558448 (+) True G420495
TU476500 lncRNA upstream 85907 58490968 ~ 58493673 (+) False LOC110524147
TU476501 lncRNA upstream 85907 58490968 ~ 58493673 (+) True LOC110524147
TU476488 lncRNA upstream 102175 58477182 ~ 58477405 (+) True G420465
TU476546 lncRNA downstream 20787 58602250 ~ 58602784 (+) False LOC110524154
TU476549 lncRNA downstream 37888 58619351 ~ 58620032 (+) False LOC110524154
TU476548 lncRNA downstream 38006 58619469 ~ 58620032 (+) False LOC110524154
TU476547 lncRNA downstream 38114 58619577 ~ 58620032 (+) False LOC110524154
TU476550 lncRNA downstream 38114 58619577 ~ 58620188 (+) True LOC110524154
XM_021603533.2 mRNA upstream 40144 58512929 ~ 58539436 (+) True LOC110524150
XM_021603534.2 mRNA upstream 40506 58512929 ~ 58539074 (+) False LOC110524150
XM_021603532.2 mRNA upstream 73647 58500105 ~ 58505933 (+) False LOC110524149
XM_021603530.2 mRNA upstream 73647 58500107 ~ 58505933 (+) True LOC110524149
XM_036977960.1 mRNA upstream 88355 58484043 ~ 58491225 (+) False LOC110524147
XM_021603538.2 mRNA downstream 39055 58620518 ~ 58646110 (+) False LOC110524153
XM_021603539.2 mRNA downstream 39055 58620518 ~ 58646110 (+) False LOC110524153
XM_021603541.2 mRNA downstream 65697 58647160 ~ 58656842 (+) True LOC110524155
XR_002473549.2 mRNA downstream 80447 58661910 ~ 58669974 (+) False LOC110524159
XM_021603542.2 mRNA downstream 92795 58674258 ~ 58699892 (+) False LOC110524157
TU476101 other upstream 162804 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 679932 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1212243 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1621415 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1654404 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 361265 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2112794 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3140074 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3524060 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3701689 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile