RNA id: XM_021603627.2


Basic Information

Item Value
RNA id XM_021603627.2
length 6602
RNA type mRNA
GC content 0.47
exon number 26
gene id LOC110524202
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59930644 ~ 59968946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCATCAGGGCCTTGCACGTCGCAAGCGTGTCCACTAggtggtggtgttgtctacgAGCTGGAGGGTGTACTGTGTGCGTTCCCGCAGCAACAGGGAAGATGGCTGCACTCGCATCTCTCACCCAGCTGTCAAGTGGGAACCCTGTGTACGAGAACTTTTATAGACAGGTGGACCCAGGAAACACGGGGAGAGTAGGGCCCACGGAAGCTGCGTTGTTCCTGAAGAAATCGGGTCTTCCTGATGTCACGTTGGGAAAGATCTGGGATTTGGCAGACCCAGATGGGAAAGGGTTCTTGGACAAACGGGGGTTCTATGTAGCTCTGCGGTTGGTGGCCTGTGCACAGAGCGGACAAGACGTCAGCCTCTCGAGTTTGAACCTCACTATCCCTCCCCCCAAATTTAAGGACACTAGCAGCCCATCTCTCAGCACATCATCCGTCTCTAGTGAACCCCACTGGGCTGTGAGGCCTGAAGAAAAGGGTAAATTCGACGGCATATTTGAAAGCCTTGCACCAGTCAGTGGACTCCTCTCTGGTGACAAAGTAAAACCAGTTCTAACCAACTCAAAGCTACCTCTGGACGTGTTAGGAAAGGTTTGGGATCTCAGTGACATTGATAAAGATGGACATCTGGATCGAGATGAATTTGCGGTGGCCATGCACCTGGTCTACCGGGCCTTGGAGAAGGAACCGGTCCCCTctgttctcccctcctctctcatccctccaaaCAAGAGAAAGAAGTCATTGGTGGGCTCCCTTCCTGGCATGGTGCCCATGTTGCCCGCCAGCCCCCCGCCCCCCAAGGACAGCCTGCGCTCCACCCCTTCCCACGGTAGCATGAACTCCCTCAACAGCGCCGGCAGTCTCTCCCCCAAACATTCTCTAAAATCtgcacagCACTCAGTGAACTGGGTAGTCCCGGTGACAGACAGAGGGCGCTATGATGACATCTTCCTGAAGACAGACTTGGATGTAGATGGCTTTGTCAGCGGCATGGAAGTCAAGGACATCTTCATGCACTCAGGGCTGCCCCAGAATCTACTGGCACACATATGGGCCCTGGCAGACACCAGGCAGATGGGGAAGCTGACGCGGGAGCAGTTTGCTCTGGCCATGCACTTCATCCAGCAGAAAGTCAGCAAAGGCATGGACCCTCCTCAGGCCCTGACCCCTGACATGATCCCCCCTTCAGAGAGGGGCACTCCCGTGCCACTGTGTACCACTCCCTCCCATAGTATGTCTGGGTACATGACTCCCGTGGGCTCTGAGGTGGCCGCTCTGTCTGAGATGAGGCGGGACAGCTCCAGTTCTGTGGGGTCAGGGTCAGAGTTCACTGGAATCAAGGAGCTGGACGACATCAGTCAAGAGATCGCTCAGCTGCAGAGCACTCTTGCTTTTACACACTGGAGTGCCCTCAGggagAAGTATACCTTGGAGCAGgacatcagagagacagaggaggccATCAGACACAAGTCCTCGGAGGTGCAGGAGATGCAGAACGACCTGGACAGAGAGACGTGCAGCTTGCAGGAGCTGGAGGCCCAGAAGCAGGAGGCCCAGGAGCGGCTGGAGGAGATGGACCAGCAGAAGGCCAAGCTGGAGGACATGCTCAACGACGTCCGGATCAAGTGCAATGAGGAGTCCCAAATGATTTCATCCCTGCAGAATCAGATCCACTCCCAGGAGACTGACCTGCACAGCCAAGAAGAGGAGCTGAGTCGAGCCAAGGCAGACCTGAACCAGCTGCAGCTGGAGGAGAGCCAGCTGGAACAGAGCCTAACGGCTGGCAAGTTCCAACTGGAGACCATAATCAAGTCCCTCAAAGCCACCCAGGACGAGATCAACCAGGCTCGCAGTAAGCTGTCTCAGATCCAGGACAGCCAGCAGGAGATGACTAAGAGCATTGAGCAGTACAACAGCAACCTGAACGGGACCCACGGAGGCAACATGACCAACCTGGCTGACATGAGCGAGGGATTCCACGACCGCGAGAATGGAGGTTTCGGAGCCATGGAGGACCCATTTAAGGTGAAGACATCTGGGTTCTGTAGCGTCCCTCAGGAGATGCACACAGACCCCTTCCACTCCGAAGACCCCTTCAAGACAGACCCGTTCAAAGGTGATCCCTTCCAAAACGACCCTTTTGCAAAGCAGCCATCACTACCAGCCCCTGcagATCTCTCTCACCACCCAGACCCCTTTGGGGGGGACCCATTCAAAGAGACGGACCCCTTCAAAGCTACGTCGGAAGACTTCTTCAGGAAGACCACCGTCAAGGCAGACCCCTTCAGCACCCCCGACCCCTTCAGTAAAAGTGCCACGCTCCCCACCAAGACAAGTCACTTTACAACCAGCGCAGACCCTTTCATATCCATTAGCCCAAAACCCACCAGAGGCCCAGGACCAGATCTCTTTGGCACGCTCGACCCCTTTGGAAGCAGTACTGCCTTTGGAAGCAGTAACAGCTCATTTGGCAGTAACAGTGGGTTCGCAGACTTCAGCCAAATGTCAAAGGTCAGAGACCCGATGGAAGGAAGAGGAGGCTTTCCAGAATACCAGCAGTCTGGGTTCGTAGATGACCCCTTCAGTAGGAAGCAGGACGGCCCAGCTCTGCCGCCCAAAAAGAGCATTCCACCCAGACCCAAACCACCCAGTGTAAAACACACAGAAGAACGTTGTAAAAGCACCCCTGTCAACATGCCTGGAGGAGCGGGCGACTCGACCAAGCCCTGCGACCCCTTCCAGCCGTTTGGCAGTGACGGCATCGACCCCTTTCAGAGTAAAAAAGGGGTCGGAGACCCGTTTAGTGGCAAAGATCCTTTTGCTCCATCTGCCTCAAGTAAAGCCTCTAAAGACTGTTCCTTGGGTTTTGCAGACTTCAGTTCTtTTGGAAATGAGGCCCAGCAACTGGAGTGGGCGAagcgagagagtgagcgagcgGAGCGGGAGCGGCTGAAGAGGCTCCGGCAGCAGGAGCAAGAGGACTTAGAGCTGGCCATCGCTCTCAGCAAGGCCGAGATGTCCCACGGGTGACCTGGACtggacacacgcagacacacatacatagagATATGCACAAATAGACAAACGCACACATAGACTCTTACTAGCGTTACTAgttcagacactcacacacacacacgcatgacaCATTCGTATACAACTCACAAACCGTACCCCACACACTGTGAAGGACACATAGCTGGCCATTTCCCTCAAGGCCGATGTGCCCAAGACATGACCGCttcctcaaccacacacacagacatacgcaTGCAGACACAGACCACCGCTACAACACACATATACAAACTCCACCTGATacgcacacacagatacacacacctcGCCACACATTCCCCAGACCGACAAACTCTCAAAGCAAAACAATAGCAAAACAGAACTTTTGGGGTCGGCCTGGACCCTATGTGGAAACAGAACTGGATGTTACTTTACGGTGGGAGGTTGGAGTGGAGGGTGGGAACCAGCAATCACAATCTCTCTTACTGTTTTTAATTGATAGGTGTGGAGGGGAACGGATGATGGCCCATGATTTGTGAAGGAGGTGATGCGCTGTTTAAATGCACTATAGAGGCTGGCTTAACATGTAAAGATGAGCAGAATATGTGTCTTTCTGGTGAGGGAGCATGGATCCCCTCACTTGACCGACTAGAGCTCTGGCAGATGTGAAGAAGGGAATAGCTAAAGGTTATGGCGGGATGCTTTTGAAGATCGAGACATTATTTTAGTATTGGTTTATTATGTGAATGTGGTGAGCCATGGGAGGAGTGCTGGAGGCTTCAAgtgttgtgtgagagagaggtctgCTTGGACCAGAACAAATTGTACAGATATATTTTCTTTCTCGCCGAGTGTGAGATAGTAGAtgcattgttttttttacaatatttCAGTGCTTCTTCAGCGAACATAGGGAGAAGGAATGGATGCTTAGTTGTGCCTCTTCTGACAGTTTAAGTAAGTTCAAAAGGCTGTGATTTACACCAAACAACCACAAAAAAAGACTAGATGAGGGAAATTCTTTCAAgttttactatgttttattatAGAGGGTTTAATTGCAGATTTGTacgatttttatttaatttaattatgTGGTaagtgttattttattatttgatgTAGTATTTGTTAAAGGACTGAAACAATATTGTTAATTACAAGTTGTAAGAACTGCAAAAATGGATAAACCTGCAAGCACACGCTGCAGAGAGGTCAAAGAAAGTAAGGAATGGCCTGTGGTTTTCTTCAGGCTAACCATCAATGATATGCAAATTCATTAGGTCACGTAAGTTTCACAGCTATAACGTGAATATTCAACGGTTTGCGGTACAGTGTGTCATAGTTTGTTacaacttttattttattttagccgCATTGTCTTTTACTTGATTTTCTTGCTGATGGTACTGCCTAGCACATTAAACCTGTGGTTCTAACTTCACTTTCAAACTCaaagggcaattccaccacttttcaatcTCATTTTCATTATCAACAGCGCAATACCAGTGTTTACATGTGTAAAAACGGCACTACAGATTAAATAAGTCACGATGAACTTCGCAGGGTAGTGAAAGTGCACGCCgcggtgatcttgatgctcctttccaataaatatcgagggtcttattctggtgacatgatgatcgatgcttgtcTGCCGTTTGACAAGTAAAAATATTCTCGCTGTTGTCCAAAATAATGTCATcatgtcaactagcctacccacactgtatctgcgagctgttggctagagctctcgtgccaagaccagagtgggaaAATGTGCTATTgaacgcaacagtttttgtgacaaaactatcggacgagttgaaaatgcgatggaaacacattcaactttagatttttattcagTACACTTAAAACGAAAAATGACATTTAATGTGCATTGCGTACTGACTTTTGTCCACAACAAGtccgtttggtggaaacacacccctaGTGGGAAAATACGCATATTTTCATTATGCAGATTTTTGAGTATTCGCATTAAAATcggtcgccaattggatggaaacctaactacagagaagcattttttaggacctttcttcttatctttttaaccacagatcatagaagCGCGTCcttttcacatatgtagacaaTGGTATGGCGCTGGtcataatgaatatgaggttgaaaagtggcagAATTGCCCTTTTAGCTTTGAATTGAACTGAATAGAGATGTTGATAAAAGTAGCTCATATGAAAATGACAGTTGCACTCATTTCCCCTTTGTTTTATGTTCTCCTGTTGCATTGAACTATATGTGTCCTACTGTACATGTGTCCATTACCTTTAATAAGCTTCCATGTAATGCCATTGTTGTCCCCTACTATTGGAGTAGTCTGAGTGAAAAGACCTATCCTGAGCCATATGTTgtgaaaatgtattattaaaGCTACGTTCTCCTTTGGGTTGGGGAAGGACATGATTTAAGTTACAATTCTGCGGTATGGACCATTAACACTGCCACTAGGTTGAAATTGCAATCATCTCTCCCTGatatttatttgtttatgttTACATATCAAACTTCTTTGCTGTCGTGGTTACAACAGTGTAATAATATTCTATGAGAAGAacctgttctggtacagatctgaCCTTTAATCGGGCTGCTGTTTATAGCTGAGGTAACCTGTGGTCGTCTGCATGCAGCCCTGTGGTGTTTTAATCACAGGTCAGACGCCCGAAGCTTGGAATGCCAACACTCCCGCCCTTACCCAGAATGCTCTGTGTCAGAACCCCTGTAATGTGTCCTCGGGTTAGGGGAAATCCACAGTGAGTGTGCTTGGTTGGCCGTAGACCAGGCCACAGCTCTCTCTGTTCATTGGTCACTTCATGCCGCTTTTTATACCTTAaacatccatccatcctttctTACTCCATTCTTTGAAGTTATCATTGATCTGTCACTATTGGATTGGTGAAAGAAAGGGTTCCATGATGTATCTCAATCACCCATCTAATCATGTCAGATTAGGGAGGCAGGATGGAAGGATGCATTTTGAGAGTATTGAAACAGGGCCCAAGTGTTCTCTCATCCACTACCTAGTGTTCTCTACGTACTTACCACTCATGCTGTATTTTGTCTTTGATACCACCATTGTGCAATagatgttattttttattttctcgtTGTTCGGGTGTTCGAGTTTGATCATGTGTATAGGGATACATGCAGAGAGGCCTGTATATCTATTGTACAAGCCAAACAGATTGTAGAGGGCTTTTCTTTTGGTTTTCTGGTTTTCTGACAACTGATCTGACTTCTAGCTTGGTGCATTCCATTTCCATTTGGCCTGCCTTTGACTGTCCCTCCTATAGATGAAAATAAGAAATAATCCAGCTGTCTTTCTGCATTGTATAAGATGTACACAAACTGTATATTATGTCCGTTATATTTGTTTCATGAGAAGTGGAAAAATGTGTGTAACTTGAAACAGGATATATGCAAAAATACAAACGCTTGGATTTATTTGAAATGCTAATCCCCTGTACATGGTCATTGTTTACTAGAATAAACATTTCAGTTAAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477831 lncRNA upstream 72179 59853434 ~ 59858465 (+) True G421677
TU477827 lncRNA upstream 85623 59844379 ~ 59845021 (+) True G421673
TU477826 lncRNA upstream 89336 59840540 ~ 59841308 (+) True G421672
TU477822 lncRNA upstream 92436 59836359 ~ 59838208 (+) True LOC110524196
TU477695 lncRNA upstream 108678 59815678 ~ 59821966 (+) True LOC110524195
TU477889 lncRNA downstream 19075 59988021 ~ 59988310 (+) True G421731
TU477907 lncRNA downstream 40409 60009355 ~ 60009830 (+) True G421748
TU477951 lncRNA downstream 108944 60077890 ~ 60078373 (+) True G421788
TU477969 lncRNA downstream 119686 60088632 ~ 60089109 (+) True G421799
TU477976 lncRNA downstream 128817 60097763 ~ 60097995 (+) True G421806
XM_021603623.2 mRNA upstream 101 59920588 ~ 59930543 (+) True LOC110524200
XM_021603624.2 mRNA upstream 10468 59915582 ~ 59920176 (+) True LOC110524201
XM_021603620.2 mRNA upstream 26610 59889619 ~ 59904034 (+) False LOC110524198
XM_021603621.2 mRNA upstream 26960 59889619 ~ 59903684 (+) False LOC110524198
XM_036977994.1 mRNA downstream 164290 60133236 ~ 60161934 (+) False malt2
XM_036977993.1 mRNA downstream 171318 60140264 ~ 60161934 (+) False malt2
XM_021603645.2 mRNA downstream 184300 60153246 ~ 60161934 (+) False malt2
XM_021603644.2 mRNA downstream 184301 60153247 ~ 60161934 (+) False malt2
XM_021603650.2 mRNA downstream 196662 60165608 ~ 60180274 (+) False LOC110524208
TU476694 other upstream 986427 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 1513868 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2030996 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 2563307 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 2972479 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 725311 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1752591 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 2136577 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 2314206 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 3076144 63045090 ~ 63051530 (+) True G425224