RNA id: XM_021603645.2


Basic Information

Item Value
RNA id XM_021603645.2
length 3293
RNA type mRNA
GC content 0.50
exon number 17
gene id malt2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60133236 ~ 60161934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGATAGTGTTTCTGCAACGTGATGGAGTTGTCTCTTTTGTTGATAGTTCCAAACTTCTCTCTGATACATATTTCCACTGACGCTGAGTTTTGGTGTGATTCTATTGGCGTAGGGAAGGTGAAAGTAAACTTGAGGGGGAACATGGTTGCTTTCATGCAAATACAAGGGACAACACAAAAAGAGGAACCGAGGTGAAATGAGAACCAAGACATTGTTCAACCAATTGTGAGAGTTGATTCACACCGAGACGAGATTGGCAAAACGGACTACTCTAGTTCCGAAATATATGATTATCGATAGAGATTTCTGAACTAGATGAGAGCGGTCGGTTTGTCTCTTCTTCCACTGAAAACTATTGAACAACTTCTTGTCTCATCGAAAACATCGTCGGAATCGGTAAAGAGGCGGGCGTTTGTAAATTTTGAGATAAAGATACAGTAGTCTCGTTTACGTGGACGAAGAAATCCATCTCAGGTTATTCCGGAAGCTGCTGAATAGAACGCAGACTAGAGATGGGTGACTGGAATCTCAGCATTGGGACTTTGAGTGAAGGAGCTCAGAGCAGGTTAGCTGACATGCTGGATAATGCTAAATGTGGATGGAGACAACTTGCCAATGTTGTCACTGAGGAACCTCGATTCCGCTGCAGTGAGAATGAGATGACCAGCTGTTCGCTCCAGGTGCTCAGCCCGACAGGCAGCCCCAGCCGCTACCTCCTAGAGAAGCTATCTGAGCGCTCCTGCACCCTGGGCTTCCTGCTGCACTGCCTGAAGAAGATGGAGCACCATGAAGCTGTGCAGTACCTCACTGCTAACGtgatggAGCGGTTTCAGATCACAGTGCAGCCCCAGGCCCAGCATGCTACAGAGGGAGGCAGGGTTGTGCTGGTCTGTAAGGCCATTGGTCCTGCTGCTATGGGCTACCAGTGGTTCAAAGGCAAAGAAGAGGTGCTGGGTGGAAGTGGTCCAGAGCTGGTCCTTTGCCCTTTAACCCCAACCCACCAGGGACACTACATCTGCCGGGTCAACCATGGAGAGAACTTTGTCTTCTCCCAGTGGGCACATGTCCGCATTGTCAGGTCAGCTGGCTCCAGCACAGGTGTCAGTAGCAGCTTCTTCCCCCCCTCAGTGAGTGGAGTGCGTATTGTCCGTCAGCCCCGGCCCCAGGTAGTAGCTGAGGGGGACTCCTTGTGTCTGGACTGCTTTGCTGAGGCCAACCCTCCTCCTCAGTACCAGTGGTACCACAATAAACAACCAATGCCAACAGACAAGATAAGCACCCTGAGGatactgtgtgtgaccaCAGCAGATCGAGGAATGTACAGCTGCAGGGTGTTCAACCTGTACCATGAGGTGTGGAGCGACCAGGTCCATGTCAAAATAGACCCTGGTTCCTCCATTGATGCCTCCTGGGGAGAAATAGACCCTGctgccTCACCTAGCCCTGCCAGGCAGATAAGTAAATTATATGCCACGGACAAGGTGGCTCTTCTGATGGGCAACATGAACTACCTGCACCACAGGCCTCTGCGAGCGCCCATGGCTGACGTGCACGAGATGACCAACCTGCTGCGCCAGCTGGACTTCAAGGTGGTTTCTCTGCTGGACCTCAACTGGCAGGAGATGCACAGCGCTGTAACTGAGTTCCTACTGCTGCTCGACCGCGGCGTCTATGGGCTTCTGTACTTTGCGGGTCATGGTTATGAGAACTATGGGAACAGTTTCATGGTGCCCATTGATGCCCCGGCTTCTTATACCTCAGAGAACTGCCTGTGGGTGCAGGATGTGCTACAGCGGATGCAGGAGCGAGAGACGAGCCTCAATGTATTTCTATTGGACATGTGTCGCAAAAGAAACTTGAACGACGGCGTCCCTCCACAGCCAGGGCAACTGAAAGTGACCGCAAACATAGTGTTTGGTTATGCCACGTGTGTGGATGCAGAGGCCTTTGAGGTGAACAAAGACGACCTGTCCAATGGAATCTTCATCAATTTCCTCAAACAGAGAGTCATGGAGGACGAGAAGGTCACTGTCATGCTGGACAGGGTGGCCGAAGACATGGGACGGTGTGAGATCACACGAGGGCGTCAGGCTCTAGAGTTACGCAGTAATCTTTCTGAGCGGCGTGCACTCACTGACCGCATCCAGAGCTCCGGCTGCCCGGAGACCACCTCGGCACGCAACCTGCAGTGGGCCATAGCACACGTTCTTCCAAAGAGTCGTAACCTGCAGTTTGACTGTGGCGTGACGGTGCAGCTGGGCTTCGCAGCAGAGTTCTCCAACATCATGATCATCTACACCCGAATATTGGAGAACCCCAAGGAAATTGCGTCCTGCTCCGCCCATCTCACAGACTTCACTGAGGGTTTGGATATGGATCTGAAGATGAGTAATCAGGAGAACCTCCTAGATGCAGGGAGTTTACTGCCAATGGAGATCCTCCTGCCTGCAGAGCTTCCAGGCCTCTACACCCGCCTGAAGGGACTGCAGAGACTGAAGAAAGAGTTGACATTCACTGTGTGCCTTCAGTATAAGTATACAAACTTGGATGAGGAGGTCCATGAGAGGCAAACTGTCACTGTGGGCAAACCACTGGTATCCAAACTCAATCTCCACGAACCTCGGCTTCCCCGCTCCTACTCGGCCTCCTCCTCATTCGACCTTCACTCCTTCAGCCATTCCTCCTCCTTCCCAGAGGGCTTTGGGCCAAGCTTCCCTGCCTCAGAGACTTCCTCCATTGGCTCAGCCTCCACCACCTGGTCATATTACTCACAGCCAGGAGTGTCTGCCACCCCATCTTCCCCCGGGAAGTTAAATCTACCTGTGGAGGATGACAGTCCAGAGTTGTTTGATTCTGACACCCCCCAGCCTCTCACCACAAGCAAAAGCCTGCCTCATGGTCAAGTAGAGGACCTCACATATCGGTTCAGTAACATGCACAACTTCCATTCATGTTAGTCATGTCAATTTGCAGTGTTGTAAGCTGTGCAACCCATTGTGTTTTGTCCACAGACCTACACATTAACTTATAGTGCAACTTACTTTACAACAAATTGATCCCATGACCTGCATTGTTTATACGTTAAAGAATATGTAGAGAAAAACGGATGTAATCTCATTTTTTTAGCTCATGTAATGGGTGTTTGTCTTAATGTTATGAACATATAGTGCCTTAAAGCATAACCATTTGGGCATGCTGTTAATACATTTCTTTCACATCTTTCACATGGTGGatttaacttctttttttttttactgacatAAATAACTTATTAAAATGTGTTTGAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477965 lncRNA upstream 4447 60140581 ~ 60148799 (+) True malt2
TU477998 lncRNA upstream 16063 60136882 ~ 60137183 (+) True G421826
TU477997 lncRNA upstream 16631 60136403 ~ 60136615 (+) True G421825
TU477984 lncRNA upstream 40391 60112635 ~ 60112855 (+) True G421814
TU477981 lncRNA upstream 43337 60109602 ~ 60109909 (+) True G421811
TU478008 lncRNA downstream 20689 60182623 ~ 60184805 (+) True G421831
TU478017 lncRNA downstream 25062 60186996 ~ 60187410 (+) True G421840
TU478020 lncRNA downstream 31422 60193356 ~ 60193756 (+) True G421843
TU478021 lncRNA downstream 32289 60194223 ~ 60194784 (+) True G421844
TU478023 lncRNA downstream 34125 60196059 ~ 60196347 (+) True G421846
XM_036977985.1 mRNA upstream 184300 59930644 ~ 59968946 (+) False LOC110524202
XM_021603650.2 mRNA downstream 3674 60165608 ~ 60180274 (+) False LOC110524208
XM_021603651.2 mRNA downstream 3674 60165608 ~ 60180274 (+) True LOC110524208
XR_005051588.1 mRNA downstream 61863 60223797 ~ 60267847 (+) True LOC118964531
XM_036977996.1 mRNA downstream 206457 60368391 ~ 60395165 (+) False LOC110524211
XM_036977995.1 mRNA downstream 206459 60368393 ~ 60393191 (+) False LOC110524211
TU476694 other upstream 1209029 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 1736470 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2253598 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 2785909 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3195081 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 532323 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1559603 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1943589 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 2121218 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2883156 63045090 ~ 63051530 (+) True G425224

Expression Profile