RNA id: XM_021603650.2


Basic Information

Item Value
RNA id XM_021603650.2
length 3950
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC110524208
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60165608 ~ 60180274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACACTGCCCCTTTTCACAAACTGTTTTCAGATGACATATGCGCAGTGGAGTTCCCTGTTCATAGTGCGCCATTTTGTGACAGTAGGCCGCTTGTTTCGTGCAAGAGATTAGTTAACCTGTGCTTGCAAACAAAATAACGTTTTCTCAGTGTAATCATGGCTGAAAACTATTCGACGGGGGAAGCAGGGGGCGTTGAGATTCCTGAGGGAGCAATTCGTAAATTGTCGGAGCTGAGAGTCATTGACTTGAAAGCAGAATTAAAAAGACGAAATCTGGACGCCACTGGCATCAAGAGTACgctgacagagagactgaaaaagGCGATTGAAGAAGAGGGTGGAAACCCAGATGAGATGGTGGTTGTTCTCGATGCAACTCCTAAGGCGGCACTGGCTAAACGGACCTCCAAAGGGAAAAGACCAGAGAACGATGAATCAGAGGACTGCACCATTGAGGAAGATTCAGGTGATGGCCAGGATGACAACATGCAGGACATGGACATCCTGGATATGAATGTGCTTGATGAGGCTGAGAATGACAACAGTATGCCGGCAGAGGAGGAGTATGACACAGATGAAGTCCTGAACTCTCCTTCAGATGAAGTCAACACCGAGATCCTGGCTGACGAAGAGGCCATGAATGAAGATGAACGCGAACGCAATGGAATCTCTGGCTCTCTTGAGCTGATGCGTGAAGCCAAACCTGAAGAGGTTCAAGAGAAGGATCCGAAGCCCAAAGACTCAAAGGAAGAAATAGAAACTGATAAAGTAGCCGGGTCTTGTTTATCTGAGCCGCTAAATGAAGAGCGCCAGGAGCCACCGACAGAAGATCAAGCCACCATCGGGGACAAGGTCAATGTTGCCGAGGAAGACAATTTGGAGCCTGAACTGTCGACTAGCGACATGGACGTTGCTAAGCTAACTgcgagtgaaatgaaagacactGGCGACAAACAAAATGTTCCCGACGAGGCAGATGACGCTGAAAGCGAGTGCGCTCAGGCTGTTAGCGTAAGCGAGCAGGGCGCGGGTGAAACCGAAAGCGCTGTTGATTCGGAAATGGTCTCTAAGGCTGAGGGTGAGGAGAAGACTGAAGAGAATGCTGCAGAATCAACGACAGTGAAAGAGTCCTCTTCTGTTGAGGGTGATGATCAGAAAAAGAGTTCTGATGAGGAAAAGGGTAGCAAGCCTGACTCAAAAGATGAAAAGGGCCCTGCAGGTAGTGCTCCAGCTAGTAGTGGCAGAAACCTGTGGGTTAGTGGCCTCTCCTCCAACACCAGAGCAACTGATCTAAAGACTCTGTTCAGCAAGCACGGAAAGGTCGTTGGCGCTAAAGTGGTGACTAATGCCCGGAGCCCCGGGGCTCGCTGCTATGGTTTTGTCACCATGTGTTCCACAGAGGAGGCCACCAAGTGTATCAGCCACCTGAACAGGACCGAGCTCCATGGTAGAATGATCTCTGTGGAGAGGGCTAAGAACGAGCCTGCTGGCAAGAAGCCTGCTGACAAGAGCGATGCTAAGTCTGGCACCGACAGGAGACACTCCTCAGACTCCAAGTCCGATGCCAACAAGGATGAAATGGCTGAAGGTGAAGTCGGAAAAGATGGCAAACGTAATGAGAGGACAGTGGTGATGGACAAGTCCAAGGGAGAGCCTGTCATCAGCGTGAAAGCCAAAAGCAAAGACCGGAGCTCCAAGAGTCGCGACCGCAAGTCCCCAAGCAAAGAGAAGGACATCCTGTCGTTTGACCAGATCAAGGAGCAGCGTGAGCGCGAGAGACGGAGGCAGCGGGAGAGGGAGGTCAGGGAGGTGGACAGACGCAGGCCCTCTGGGGAGCGCGGCAGTGGCCCAGACCGTGGCAGCGTGGACAACCGCACAGAGCGTGAGCGTATCCGCCTGTTCCGGGAGAAGGAGGAGCGCGAGCGCCTCCTGCGGAAAAGGAACTGGCTAGAGGTGGAGAAGGAGCGGCTGAACTTTGACCGCATGGAGCGCGAGTTCCTGGAGCGCGAGCGTCAGCGTGTGGAGTACGAGCGCCGGCGTGAGCAGGAGAGGATCCAGCGGGAGAGGGATGAGCTCCgcaggcagcaggagcagctgcgCTTCGAGCAGGACCGCCGCCCCCTCAAGAGGCCCTACTCCGACCTGGACAACAGACCTGCTGCTTGTAGGAAAGACGACTGGCAGGACAAGAGGCTGGCTATGGATGACCGCTATGGGGGGCGCTCAGACTTCGGTCGCCAGGAGCGCTACCAAGACATTGACCACAGGGACCGCGGTCGCTACCAGGACGATGCCGTCATTGACAGGAGGGACACTTCACGGGCTGTAGTTGCAGACAGGGATAGCACGCACTTCTCGGACCGTACCGAGAGGCACGGGAGGGACACCTGGACCGCAGCAGGAAGTTATGACAAGCGTACTATTAATCCAAGGGAGGGCCGTGACTGGGACAGAACCTGGCAAACCGGTCGAGACGGGGGCATCCCAGGCCAAAGTCACATGGGGGCACGGGGAGGAATGGCGAGTCGTGGAGGAGGCTACATGACAACCGGGACCTCCCAGTCCCTCTCTGGAGCTCTGAATCGTCAGAATCAGATGATGCAGGGTGGCGGGGCCTTCGGTCGCCGCTACTGAGGTCTGAACACCCTTGTTCCCAGTCACATGTTTAGATGTATTGTGAAACTGTCTGCAGCATGTATATTGCTCACAAAAGCTTTGTGAATTCGATGTTGCTTTTatagaccctttgacttttcttcCTCCTTTTAAAATTTAAGATTGCAATTGAATTTAACTGAACATCTGAGTTTTAAATGTCTGATCAGATCATTCATAGTTTTTTCACTCTgaattacctttttttttttcaaatagaAAATTGATAAATTCTGTTCAatttgtgtgttttgtatgtggTTGAATCTCGGTAAGAAATGCTCAGGAATGCGTCTGCTTAAACTTGGTTGCGGAAAAGTATGAACACAATGGTTATGATTGCATTTCAGGCTTAATTTCAATTACTGTCAAATGTGGCATTGTCTTAGTGGTAATGTACAAATCTTTTAAGAATTTGTATTGGATAGTAGTAAACGATTAACTGTGTTTGATTCAACTGCAGTTGTACAATACCACCACTGGATGGCACCAGATGGCTATTTTCTGTGAGATGAAAATGCTGCCTAATAAAGTTTTCTTTTTGCAGGCCAAGGGcaaacatttttatttacttTCTCGTCATGATTGTTTTTAAGAGCAATGTTTTGCAATCAAATATTACTAACACAGGTTTGGTTTGTGGTAGATAACTCTCCACAAATCAAAAAGAATTAGACCCAAGAGCTCTGGGCTCTTCATGCAACCAGAGACATAAGTACATTAATCATCTTGCCCTAGTGAAATGTGTTATGTGGGTATTTTCACCTACATACTTGTAGGCTACATGTTTGGagtgttacattttttttgtgaccATCTTTTCATAATGAGCTTAAGAGTGTTAAAATAACCTGATTAGTTTGGCATGATTGTTGTCTATCTACTCCATAGGGCCTAGGCCACACTGATGTAAACAGTTGTTTAAAATTGACGTTTTGTTTAATCTACTCGATTTTCTCCTAACCTACCAGCAGTTTTCCCCTCTAGCAGCCTGCCATAATCTTTGGTGTCTATCTTGCCCAGCTCAGAGATTAAAGATTAATCTTTGGTCCAGTCATAGAATTAGCATACTATGATAGACATGAACCTTAAGGTcagccatcttggtcagggagttggacagacaagttgtaaatgcaacaagtactgatattgtatcataatAGCGTTCAGTGTTCCAAGAAAAACATTTAGACATTTACTGGCTGTTTGTGTATTTTAGAGGCTATTCATATAGAAATTGTATTTATAGTGACAGTATTTTGGGTAGACAGTGTAATAATTATCACATGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477965 lncRNA upstream 16809 60140581 ~ 60148799 (+) True malt2
TU477998 lncRNA upstream 28425 60136882 ~ 60137183 (+) True G421826
TU477997 lncRNA upstream 28993 60136403 ~ 60136615 (+) True G421825
TU477984 lncRNA upstream 52753 60112635 ~ 60112855 (+) True G421814
TU477981 lncRNA upstream 55699 60109602 ~ 60109909 (+) True G421811
TU478008 lncRNA downstream 2349 60182623 ~ 60184805 (+) True G421831
TU478017 lncRNA downstream 6722 60186996 ~ 60187410 (+) True G421840
TU478020 lncRNA downstream 13082 60193356 ~ 60193756 (+) True G421843
TU478021 lncRNA downstream 13949 60194223 ~ 60194784 (+) True G421844
TU478023 lncRNA downstream 15785 60196059 ~ 60196347 (+) True G421846
XM_036977994.1 mRNA upstream 3674 60133236 ~ 60161934 (+) False malt2
XM_036977993.1 mRNA upstream 3674 60140264 ~ 60161934 (+) False malt2
XM_021603645.2 mRNA upstream 3674 60153246 ~ 60161934 (+) False malt2
XM_021603644.2 mRNA upstream 3674 60153247 ~ 60161934 (+) False malt2
XM_036977985.1 mRNA upstream 196662 59930644 ~ 59968946 (+) False LOC110524202
XR_005051588.1 mRNA downstream 43523 60223797 ~ 60267847 (+) True LOC118964531
XM_036977996.1 mRNA downstream 188117 60368391 ~ 60395165 (+) False LOC110524211
XM_036977995.1 mRNA downstream 188119 60368393 ~ 60393191 (+) False LOC110524211
XM_036977998.1 mRNA downstream 196315 60376589 ~ 60395175 (+) False LOC110524211
XM_036977997.1 mRNA downstream 196316 60376590 ~ 60393191 (+) True LOC110524211
TU476694 other upstream 1221391 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 1748832 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2265960 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 2798271 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3207443 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 513983 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1541263 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1925249 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 2102878 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2864816 63045090 ~ 63051530 (+) True G425224

Expression Profile