RNA id: XM_036978073.1


Basic Information

Item Value
RNA id XM_036978073.1
length 3134
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110524325
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64460935 ~ 64494141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCAATTCTTAAATTCAAATTTGGAGCAGATAATGTAGGCCTACTATTCGACGTCAGATTGTGGGAGTAAAAAAAATGCAAGGAAGTGGGAAGGAGGGATCTGTGGCGTGGAGGGTTGTATTGGTTTGTAGGACGCCTCAACTACTGTAAAAACGAAGGTTTATTTTTCAAGCCTGTCATTACAACCAAATATGAGGattttatagggccccaGAGAGGAGAGCGCAGAATGGGTAATGCTGTTGGGACCTGCTCCAGAGCAGCATCCCCAGGCTTTCAGGATATCATCCATCCCACCATGGGATTTCTCCAGAAGTGAGAACATCAGACCGACTGCTACGTAGAGTCTCGCTGGCTCACCAATCCTCCTAAAGCCCACCATGTCACAAGCCTTGGCTTAAAATCTCTAGGTCAAATTTAGAGGACCCACCTCACCCCATGCACCCTCCAAAGAAAGGAGAACCGCTCTGCCCTTCCTCATCATGACTGTTGTGTTCCGGCCCTACCTGAGGGGTGTGTACTGTGACGATGAGGACATCAAGTACCCCCTCAAACCTGACACCATCACCCACGGCTTGCTGGCTGCAGTCACCATCTCCTGCACTGTCATCATTATATCATCAGGAGAGGCCTACCTTGTCTACAGTAAGAGGATCCACTCTAACTCTGAGTTCAACGGGTACGTGGCGGCACTCTACAAGGTGCTGGGTACCTTTCTGTTTGGggcagctgtcagccaatcactgACGGACCTGGCCAAGTTCTCCATCGGACGCCCTCGGCCCAACTTCATGGCCGTCTGCAACCCCAAGGTCTGCAAAGGCTACGTGCTGGATATCAACTGCACCGGCAATCCTCGGCACGTCACTGAGTCCAGGCTGTCCTTCTACTCTGGCCACTCCTCCTTTGGGATGTACTGTATGCTGTTTCTAGCAtTGTATGTCCAGGCGAGACTGAGGGCTAAGTGGGCAAGACTCCTCCGGCCCACAATCCAGTTCTTCCTTGTGGCCTTTGCGGTGTACGTGGGCTACACCCGCGTGTCTGATTACAAGCACCACTGGAGCGACGTTCTGGTGGGCTTCCTCCAAGGCGCTCTCATCGCCATCCTCAACGTGCGCTACGTATCAGACTTCTTCAAGCAGCGTCCTCCCCGCTGCTCCAGCCAAGAGACGGCTGAGAGCGAGGAACTGGAGCGCAAACCCAGCCTGCAGATGGCCGATGCAGAGCACAACAACCATTACAGCTACCCAGGGCCTGTGTGAGAGGGGCCAACCCAGGGGCCCCCAGACTATGTCAACCACTCTCACCACAAACTCCCACAAACCACTGGGCTGAGTGAAGGGGCTGCACACAATACCAGAACCCTCTATGGCCTGAGTGCACCAGCCCCTTTCCGAAgacatgtctccctctccccacgaATGGGAGAGGACTTTTTTTTTAATCATGAATGTTTATCATGGTTGATGTTCACAAACatttttttgtatgtttttttttttaactttatttTACACAATAGATTAGGAGAGAGTACCAAACATTCACATTAGAAAGAAAGAGACTGTTCTCTGAGGAGATTAGTTTTAGTGCACCTTAGTCGGAGGAGTAATCTGAACTTCAGTGGAAGTTTGGGATTGATATGTTGAATGTTTCACCTATGTGACATGGAGTGCAGAGAGTTAGAAATGTTGTTGATTGTGTAAGCTTTCCTTGGATGTTCCAGAGTGATATACCACTAGATCACAAACAATCACTGCAAAAATTTGCCATAAAGATTTTAGCTTTTCAGTTTTTAGCTATGCCATTCTGGCTTCCCTATTTTTTATATAGAAATGTTTTAACAGTAACATTGCTCCTTCGGTTTGAATTGAAGGTATTTGGAAGGGCCTTCTCATTTATtttctattataaactgggtggttcgagccctgaatgatatcatatatcagaccatatacaatgggtatgacaaaacctttatttgtactgctctaattatgttggtaaccagattataatagcaataaggcacctctggggtttgtggtatatggccactATATCACGGCTaacggctgtatccaggcacgcTGCGTTGCATAGTGCatcagaacagcccttagccgtggaatattggccgtataccacatcccctcgtgccttattgatTAATTATAGATTACTTTATTCTCACGGTTGGAAATGTCTATTATACCAGCGCTGTTCAGCTATTTTGCAATCACGATCACCCCTGTTAGCCACTATGAGCCACAAATACTGTATCTTCTAATATTGTGAAATTTTTCATACTGCATGGAGAATGCGTGTAAATATGCATGTAAGTACGTTGTTTTTTTCTCACATGTACATGTTCTCTGGCCCATATCAAACCAGTTCCTACCTGGACTAGTGCCCTTTAAGATTGCCACAAATGGATCAGATTCCAAGTTCACAACGCAAACCAGATGCCTTAACATGAGCCTTTAAGGGTTGTAAAGATACATCTTACCATTCGAGTCATTTGTTGCAAGCTGTTAATACTGTTCTGTGCAAAGTTCAAAGATTGGACTGGACTGATTGAGCTCATTTGTGAAGAAGTGCTCCTGTACACTGACTGTCCGGCCTGGCCCTGCTTGGCCCAGGAGGACTGACGACATATCAGTCAGCTGGTAGTGATTGTGAGGCTCAGAGAgctgactgagaagtgacctgtGACTGTGGAATGGCAAGGGCCTCCTGCGGAGACCTGGTCCCTACGGACTTCCAGACTTTTAAAAACTGCTTTGAATTCCAGAAATGAGAACCACCTGGACCAGCTTCAGTgaagtgttgttgttgtgtattacTGAATCCCCAGACCAAATTTACCCATGAAACAATAGTATGAAAATGTAATGGTGTTTGAGTCACCTCCAGGTTTCCATCATAAAAGGCACTCGGTTAGCCTTGTTCTGGGTGGTGTGTGTTTCATTTGTAATCAAACTATTTCCATTAGGATTGGTGCCTTCGAATAGGTCCTGGTTGGCCATTCTTTGTATGTCGAACATGATGCTGTTCTGTACATTCATCTAGCCATAGCTGTTTATGTATACACAAAAGGACTCTAAATAAATACCAAATATACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483122 lncRNA upstream 162921 64297442 ~ 64298014 (+) True LOC110524320
TU483097 lncRNA upstream 198314 64261154 ~ 64262621 (+) True G426467
TU483095 lncRNA upstream 200194 64260502 ~ 64260741 (+) True G426465
TU483088 lncRNA upstream 210431 64250142 ~ 64250504 (+) True G426458
TU483083 lncRNA upstream 218738 64241944 ~ 64242197 (+) True G426453
TU483745 lncRNA downstream 12076 64506217 ~ 64506421 (+) True G427024
TU483752 lncRNA downstream 15750 64509891 ~ 64510217 (+) True G427031
TU483856 lncRNA downstream 168027 64662168 ~ 64668926 (+) True G427120
TU483857 lncRNA downstream 207768 64701909 ~ 64706624 (+) True G427121
TU483895 lncRNA downstream 214837 64708978 ~ 64709770 (+) True G427157
XM_021603861.2 mRNA upstream 12329 64416798 ~ 64448606 (+) True LOC110524324
XR_005051830.1 mRNA upstream 122987 64333957 ~ 64337948 (+) True LOC118964637
XM_036978070.1 mRNA upstream 135327 64300076 ~ 64325608 (+) False LOC110524320
XM_036978074.1 mRNA downstream 26156 64520297 ~ 64568404 (+) False tle2a
XM_036978076.1 mRNA downstream 26156 64520297 ~ 64568404 (+) False tle2a
XM_036978075.1 mRNA downstream 26157 64520298 ~ 64568404 (+) True tle2a
XM_036978081.1 mRNA downstream 317100 64811241 ~ 64842855 (+) False LOC110524331
XM_036978082.1 mRNA downstream 317101 64811242 ~ 64842855 (+) False LOC110524331
TU483060 other upstream 216406 64243602 ~ 64244529 (+) True LOC110522985
TU483050 other upstream 281549 64177028 ~ 64179386 (+) False sac3d1
TU483051 other upstream 281549 64177028 ~ 64179386 (+) False sac3d1
TU483052 other upstream 281549 64177028 ~ 64179386 (+) True sac3d1
TU482675 other upstream 776696 63676414 ~ 63684239 (+) True nfil3-4
TU484247 other downstream 497960 64992101 ~ 64997138 (+) True G427476
TU484227 other downstream 530574 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 530574 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 530574 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other downstream 530574 65024715 ~ 65028702 (+) True LOC110524338

Expression Profile