RNA id: TCONS_00031145


Basic Information

Item Value
RNA id TCONS_00031145
length 2372
RNA type mRNA
GC content 0.49
exon number 14
gene id XLOC_015588
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33335911 ~ 33422798 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAAAGGGGCAGGGTCACATATGAACCGCGTTGAATGTTGGAAGTTTAACAAAGAAATATCCATCAATTTAATGAGGAGGTCGTGTCCAATACTGTCCAGACGCCGGTAATACTCCCAGCCCATTTGTTTAACAGATCCACTCAGTCTGATGTCTTCTGTTTGACACCAAAGAGGAAGCGATGCATAGAAAAGTTCCTGGATTAACGCAGAATTAGCACAAAGCAGAGACGCCACCTCAGCCCAACACTGCAAACTGACTGAGCTTGCGGAGAGAGGAAACGATTGAGGAAGAAGCTGTGTGCGCCAGAAACAGAGACACATACCCCAGCAGCTTAGGACAAGTCCCAGAGAGCACGGAGACAGGCCAGGACGGGCATCCTTCCTGAGAGGGGACCCACGCCGAAGAGAGCTTGTGAAGCATGGCGGAAAAACAGTTTTCTAATATATTGAATGGAGCAGTTCCAGGAGAGCCAGTAAAGAGAGATGAAAACTCCAGGAGAGGAAACTGGGGCAACCAGATTGAGTTTGTCCTGACAAGTGTAGGCTATGCAGTGGGGCTGGGAAACGTCTGGAGGTTCCCTTACCTCTGCTACAGAAATGGAGGAGGTGCCTTCATGTTCCCATACTTCATCATGCTGGTGTTTTGTGGCATCCCTCTATTCTTCCTGGAGCTCTCCTTTGGCCAGTTCACCTCTCTCGGGTGCCTGGGTGTCTGGAAGGTCAGCCCTATGTTTAAAGGTGTGGGCTATGGAATGATGGTAGTCTCCACCTACATTGGGATCTACTACAATGTGGTGATCTgcattgcattttattatttcttcatGTCCATGACAAATCTGCTGCCCTGGACGTACTGTAACAACCCCTGGAACACCCCTGACTGCAGTGGGGTGGTGAGCACTCATCGTGCCAATGCCACTTTCGCCAACATGTCTGCTGTTGTGTCCGGGGTAACTGAGATAGTCAACCGCACCAAGAGGACCAGTCCCAGTGAAGAGTACTGGAGGAACTATGTGCTTAATATCTCTGACGGCATTGGGAATTTTGGTGAGGTGCGTCTGCCTATCCTGGGTTGTCTGGCTGTGTCATGGTTTGTCGTGTTCCTCTGTCTTATTCGGGGAGTCAAGTCATCAGGCAAGGTGGTGTATTTCACGGCGACTTTCCCGTATGTGGTGCTGACGATTCTCTTCATCAGAGGAATCACTCTGGACGGAGCCATCAGTGGTATAAAATACTACTTGACCCCTCAGTGGCAGAAGATTCTAGACGCAAAGgTGTGGGGGGACGCTGCCTCTCAGATTTTCTATTCACTGGGGTGTGCCTGGGGTGGCCTTATCACCATGGCATCATATAACAAGTTCCACAATAACTGTTTCAGGGACAGTATTATCATCAGTGTAACCAACTGTGGCACCAGTGTGTACGCTGGCTTCGTTATTTTCTCAATCCTGGGATTCATGGCTCATCATTTGGGGGTGGACGTATCAGAAGTGGCTGATCATGGTCCAGGGCTGGCATTTGTGGCCTACCCAGAAGCCCTGACACTGCTGCCCATTTCACCACTCTGGTCTCTGCTCTTCTTCTTCATGCTCATCCTATTGGGTTTGGGCACTCAGTTCTGCCTGTTGGAGACTCTGGTGACGGCTGTAGTAGATGAGATTGGAACTGACTGGATTATCAAAAATAAGACTTATGTCACACTGGGAGTTGCTATAATAGGTTTCCTTCTTGGAGTGCCACTAACTACACagGCGGGAATTTACTGGTTGCTGCTCATGGACAACTACGCTGCCAGTTTCTCTCTGGTCATCATCTCTTGCATTATGTGCATCTGTATAATGTATGTCTATGGTCACAAGAACTACTTTAAAGATGTGGAGATGATGCTGGGCTTCCCTCCTCCAATCTTCTTCAGGATCTGCTGGAGATATGTGTCTCCTTTCATCATTACTttcattCTGATATTTACAGTGATACAGTATAAGCCCATTACCTACAATGACTATGTCTACCCTGGTTGGTCATTGGTCATTGGGTTTGCCATGGCTTTGTCTTCTGTTATCTGTATACCTATATATGCTCTGTTCAAGATTGCCATGTCTGAAGGATCCACCTTTTTGGAGCGTTTGAAGAACTCTGTGAAACCCGACCCGGACTGGGGCCCGGCTCTCCAGGAGCACCGCAAGGGTCGATACGCCACGGCAGGCCCCGAGTCAGTAGAGGTGTCTCCTCTCAAAGAAGATCTGAAGGACGAGGGCAAAGACAAACTCACGGAGAAGGAGAAAGAGACAGAGAAAAAGGACGAGATTGGTCTGACCATCCCAGGAAGCAACGGCTCGACATTGAACCCCACACCCAGCGCATAG

Function

GO:

id name namespace
GO:0060080 inhibitory postsynaptic potential biological_process
GO:0060092 regulation of synaptic transmission, glycinergic biological_process
GO:0015816 glycine transport biological_process
GO:0007626 locomotory behavior biological_process
GO:0006810 transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015187 glycine transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0005283 amino acid molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050105-3 Enables glycine transmembrane transporter activity. Acts upstream of or within several processes, including glycine transport; inhibitory postsynaptic potential; and regulation of glycinergic synaptic transmission. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in fourth ventricle; hindbrain; neural rod; optic tectum; and spinal cord. Orthologous to human SLC6A9 (solute carrier family 6 member 9).

Ensembl:

ensembl_id ENSDART00000126135

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033597 lncRNA upstream 100654 33222962 ~ 33235257 (+) True XLOC_015586
TCONS_00033596 lncRNA upstream 306483 33001203 ~ 33029428 (+) False XLOC_015584
TCONS_00033272 lncRNA upstream 308055 33022897 ~ 33027856 (+) True XLOC_015584
TCONS_00031133 lncRNA upstream 419305 32866647 ~ 32916606 (+) False XLOC_015584
TCONS_00033598 lncRNA downstream 52061 33467112 ~ 33468170 (+) True XLOC_015590
TCONS_00033599 lncRNA downstream 265022 33680073 ~ 33681136 (+) True XLOC_015593
TCONS_00033273 lncRNA downstream 344566 33759617 ~ 33771872 (+) True XLOC_015601
TCONS_00033274 lncRNA downstream 482419 33897470 ~ 33898732 (+) True XLOC_015603
TCONS_00033600 lncRNA downstream 484501 33899552 ~ 33908702 (+) True XLOC_015604
TCONS_00031144 mRNA upstream 7223 33326522 ~ 33328688 (+) True XLOC_015587
TCONS_00031143 mRNA upstream 119171 33189626 ~ 33216740 (+) True XLOC_015585
TCONS_00031138 mRNA upstream 119717 33052360 ~ 33216194 (+) False XLOC_015585
TCONS_00031150 mRNA downstream 42259 33457310 ~ 33466371 (+) True XLOC_015589
TCONS_00031151 mRNA downstream 126877 33541928 ~ 33543046 (+) True XLOC_015591
TCONS_00031153 mRNA downstream 249336 33664387 ~ 33698458 (+) False XLOC_015592
TCONS_00031152 mRNA downstream 249336 33664387 ~ 33698458 (+) True XLOC_015592
TCONS_00031154 mRNA downstream 277114 33692165 ~ 33695754 (+) True XLOC_015594
TCONS_00031140 other upstream 135543 33189584 ~ 33200368 (+) False XLOC_015585
TCONS_00031127 other upstream 508658 32826503 ~ 32827253 (+) True XLOC_015579
TCONS_00031124 other upstream 545025 32790363 ~ 32790886 (+) True XLOC_015577
TCONS_00031122 other upstream 575579 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031120 other upstream 628500 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031160 other downstream 341327 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031162 other downstream 485384 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031163 other downstream 487274 33902325 ~ 33902455 (+) True XLOC_015606
TCONS_00031167 other downstream 512168 33927219 ~ 33933001 (+) True XLOC_015607
TCONS_00031194 other downstream 2416278 35831329 ~ 35831445 (+) True XLOC_015626

Expression Profile

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