Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031148 |
| length | 1935 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 13 |
| gene id | XLOC_015588 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 33335911 ~ 33422798 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060080 | inhibitory postsynaptic potential | biological_process |
| GO:0060092 | regulation of synaptic transmission, glycinergic | biological_process |
| GO:0015816 | glycine transport | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0006810 | transport | biological_process |
| GO:0006836 | neurotransmitter transport | biological_process |
| GO:0035725 | sodium ion transmembrane transport | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0015187 | glycine transmembrane transporter activity | molecular_function |
| GO:0015293 | symporter activity | molecular_function |
| GO:0005283 | amino acid | molecular_function |
| GO:0005328 | neurotransmitter | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050105-3 | Enables glycine transmembrane transporter activity. Acts upstream of or within several processes, including glycine transport; inhibitory postsynaptic potential; and regulation of glycinergic synaptic transmission. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in fourth ventricle; hindbrain; neural rod; optic tectum; and spinal cord. Orthologous to human SLC6A9 (solute carrier family 6 member 9). |
| ensembl_id | ENSDART00000098831 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033597 | lncRNA | upstream | 147497 | 33222962 ~ 33235257 (+) | True | XLOC_015586 |
| TCONS_00033596 | lncRNA | upstream | 353326 | 33001203 ~ 33029428 (+) | False | XLOC_015584 |
| TCONS_00033272 | lncRNA | upstream | 354898 | 33022897 ~ 33027856 (+) | True | XLOC_015584 |
| TCONS_00031133 | lncRNA | upstream | 466148 | 32866647 ~ 32916606 (+) | False | XLOC_015584 |
| TCONS_00033598 | lncRNA | downstream | 52061 | 33467112 ~ 33468170 (+) | True | XLOC_015590 |
| TCONS_00033599 | lncRNA | downstream | 265022 | 33680073 ~ 33681136 (+) | True | XLOC_015593 |
| TCONS_00033273 | lncRNA | downstream | 344566 | 33759617 ~ 33771872 (+) | True | XLOC_015601 |
| TCONS_00033274 | lncRNA | downstream | 482419 | 33897470 ~ 33898732 (+) | True | XLOC_015603 |
| TCONS_00033600 | lncRNA | downstream | 484501 | 33899552 ~ 33908702 (+) | True | XLOC_015604 |
| TCONS_00031144 | mRNA | upstream | 54066 | 33326522 ~ 33328688 (+) | True | XLOC_015587 |
| TCONS_00031143 | mRNA | upstream | 166014 | 33189626 ~ 33216740 (+) | True | XLOC_015585 |
| TCONS_00031142 | mRNA | upstream | 174232 | 33189603 ~ 33208522 (+) | False | XLOC_015585 |
| TCONS_00031141 | mRNA | upstream | 182357 | 33189601 ~ 33200397 (+) | False | XLOC_015585 |
| TCONS_00031139 | mRNA | upstream | 188090 | 33189582 ~ 33194664 (+) | False | XLOC_015585 |
| TCONS_00031150 | mRNA | downstream | 42259 | 33457310 ~ 33466371 (+) | True | XLOC_015589 |
| TCONS_00031151 | mRNA | downstream | 126877 | 33541928 ~ 33543046 (+) | True | XLOC_015591 |
| TCONS_00031153 | mRNA | downstream | 249336 | 33664387 ~ 33698458 (+) | False | XLOC_015592 |
| TCONS_00031152 | mRNA | downstream | 249336 | 33664387 ~ 33698458 (+) | True | XLOC_015592 |
| TCONS_00031154 | mRNA | downstream | 277114 | 33692165 ~ 33695754 (+) | True | XLOC_015594 |
| TCONS_00031140 | other | upstream | 182386 | 33189584 ~ 33200368 (+) | False | XLOC_015585 |
| TCONS_00031127 | other | upstream | 555501 | 32826503 ~ 32827253 (+) | True | XLOC_015579 |
| TCONS_00031124 | other | upstream | 591868 | 32790363 ~ 32790886 (+) | True | XLOC_015577 |
| TCONS_00031122 | other | upstream | 622422 | 32758663 ~ 32760332 (+) | True | XLOC_015576 |
| TCONS_00031120 | other | upstream | 675343 | 32701851 ~ 32707411 (+) | True | XLOC_015574 |
| TCONS_00031160 | other | downstream | 341327 | 33756378 ~ 33757568 (+) | True | XLOC_015600 |
| TCONS_00031162 | other | downstream | 485384 | 33900435 ~ 33900512 (+) | True | XLOC_015605 |
| TCONS_00031163 | other | downstream | 487274 | 33902325 ~ 33902455 (+) | True | XLOC_015606 |
| TCONS_00031167 | other | downstream | 512168 | 33927219 ~ 33933001 (+) | True | XLOC_015607 |
| TCONS_00031194 | other | downstream | 2416278 | 35831329 ~ 35831445 (+) | True | XLOC_015626 |
