Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031177 |
| length | 710 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 5 |
| gene id | XLOC_015615 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 35116627 ~ 35137217 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046872 | metal ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ko04120 | Ubiquitin mediated proteolysis |
| ko04115 | p53 signaling pathway |
| ko04712 | Circadian rhythm - plant |
| ko04121 | Ubiquitin system |
| id | description |
|---|---|
| ZDB-GENE-070410-134 | Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Orthologous to human COP1 (COP1 E3 ubiquitin ligase). |
| ensembl_id | ENSDART00000141066 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00031176 | lncRNA | upstream | 7325 | 35117040 ~ 35118755 (+) | False | XLOC_015615 |
| TCONS_00033276 | lncRNA | upstream | 303196 | 34822568 ~ 34822884 (+) | True | XLOC_015614 |
| TCONS_00033603 | lncRNA | upstream | 647202 | 34477999 ~ 34478878 (+) | True | XLOC_015612 |
| TCONS_00033275 | lncRNA | upstream | 686349 | 34439445 ~ 34439731 (+) | True | XLOC_015611 |
| TCONS_00033602 | lncRNA | upstream | 769411 | 34181145 ~ 34356669 (+) | True | XLOC_015610 |
| TCONS_00033604 | lncRNA | downstream | 17148 | 35146296 ~ 35215487 (+) | True | XLOC_015616 |
| TCONS_00031181 | lncRNA | downstream | 353008 | 35482156 ~ 35502933 (+) | False | XLOC_015618 |
| TCONS_00031182 | lncRNA | downstream | 359267 | 35488415 ~ 35502933 (+) | False | XLOC_015618 |
| TCONS_00033277 | lncRNA | downstream | 367550 | 35496698 ~ 35497033 (+) | True | XLOC_015618 |
| TCONS_00031183 | lncRNA | downstream | 382854 | 35512002 ~ 35518429 (+) | False | XLOC_015619 |
| TCONS_00031171 | mRNA | upstream | 141825 | 34572690 ~ 34984255 (+) | False | XLOC_015613 |
| TCONS_00031173 | mRNA | upstream | 143690 | 34967022 ~ 34982390 (+) | False | XLOC_015613 |
| TCONS_00031174 | mRNA | upstream | 143990 | 34967210 ~ 34982090 (+) | True | XLOC_015613 |
| TCONS_00031172 | mRNA | upstream | 144063 | 34767171 ~ 34982017 (+) | False | XLOC_015613 |
| TCONS_00031170 | mRNA | upstream | 952591 | 34138376 ~ 34173489 (+) | True | XLOC_015609 |
| TCONS_00031178 | mRNA | downstream | 111337 | 35240485 ~ 35473586 (+) | False | XLOC_015617 |
| TCONS_00031179 | mRNA | downstream | 111616 | 35240764 ~ 35474115 (+) | False | XLOC_015617 |
| TCONS_00031180 | mRNA | downstream | 292137 | 35421285 ~ 35430980 (+) | True | XLOC_015617 |
| TCONS_00031184 | mRNA | downstream | 462275 | 35591423 ~ 35594184 (+) | True | XLOC_015620 |
| TCONS_00031185 | mRNA | downstream | 466306 | 35595454 ~ 35601370 (+) | True | XLOC_015621 |
| TCONS_00031167 | other | upstream | 1193079 | 33927219 ~ 33933001 (+) | True | XLOC_015607 |
| TCONS_00031163 | other | upstream | 1223625 | 33902325 ~ 33902455 (+) | True | XLOC_015606 |
| TCONS_00031162 | other | upstream | 1225568 | 33900435 ~ 33900512 (+) | True | XLOC_015605 |
| TCONS_00031160 | other | upstream | 1368512 | 33756378 ~ 33757568 (+) | True | XLOC_015600 |
| TCONS_00031140 | other | upstream | 1925712 | 33189584 ~ 33200368 (+) | False | XLOC_015585 |
| TCONS_00031194 | other | downstream | 702181 | 35831329 ~ 35831445 (+) | True | XLOC_015626 |
| TCONS_00031197 | other | downstream | 861989 | 35991137 ~ 35998576 (+) | False | XLOC_015629 |
| TCONS_00031204 | other | downstream | 958621 | 36087769 ~ 36087779 (+) | True | XLOC_015632 |
| TCONS_00031205 | other | downstream | 959283 | 36088431 ~ 36088479 (+) | True | XLOC_015633 |
| TCONS_00031206 | other | downstream | 959510 | 36088658 ~ 36088717 (+) | True | XLOC_015634 |
