RNA id: TCONS_00031350



Basic Information


Item Value
RNA id TCONS_00031350
length 1039
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_015748
representative False

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38225427 ~ 38230008 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TGATTCAGTTTAAACGAAATCAACTCAAAGCAGTTTAGCTAGCTCTTTTATCTTTGGCTGTAAAGTGTTATTATTGTAACGTTTTGTACATTCATCATCAACATATGCTTCACTAGCTATACTGACAAGGTCAGAGTCGGTACCGAACCACTGGTAATCATTCCGTTTTGCCTGTTTATATTCAGTGAAGTGCCagtcaactttattttttatgaaccatcaCAAGGACCAGGGTTTCAGCAAAAAATCTTCAGCTCTTTTTAGGGAAATTAAAGTCAAACATAACGTTACAACATTGGGTTTCCAAAGGAAATGGCTTGGTTCCACCATGCTTTGCAAGGCTCGGGCCAGCCAGATGCACCCACCGTGGAAGATGTGTCCCATACACAGGTCTCTATGCACACCATTACCCAGTTAGGAATGTCTGATGGACAAGGTTGGTCAACCCTCCCTTCGGTCTCCATCTCAGACTTTCCCTCTGCCTCAGGAGGAATTGTCCCCCAGCGACTGGAAGCTCTGTCCTGCACATCTCTCAGCATGGGCTCCAGACAAGATCCTGTGCCGCTGTCTTTTGTGACGCTTCAGGAGCAAAGATGTGTGCTCAGCTGGTTTTTGGGATGGAATGTTGCTCAGAAACAACGCTTTCTGGAAGATCTGATCTCAAAGGCTGTACCTGGAAAGGTGTCTAGTTTATTAGACCAGCTCAACACACTACAGGTGAACGATCGCCCTCCCAACATTTTTGAATGCCAGTTAAGACTGTGGACTCAGTGGTTTGATTCATGGAGTGAAGAGGAGAGAAATGCCTTTTTGAACTGCTTGGAGGAAAAGGACCCGACTTTTGTTGCGTTCTTCTATAACCAAGTTGCCGGAACGGCAGGCAGAGATTGAGAGTTTTCATAAAACAATTTTTGGTTCTTTGCCTTTTTCACTCTTGTAGGTGAACACGAAATCAAGTCTTATGGACAGCTAAAGGCTTTCAGAACAGCAATGTGACTATTTCAAGTATAATGTAAAacgtttttctaaaataaaaccc

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159396

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033287 lncRNA upstream 225951 37999779 ~ 38000194 (+) True XLOC_015741
TCONS_00033286 lncRNA upstream 245087 37975579 ~ 37981058 (+) True XLOC_015740
TCONS_00033285 lncRNA upstream 247645 37974996 ~ 37978500 (+) False XLOC_015740
TCONS_00033284 lncRNA upstream 252407 37972938 ~ 37973738 (+) True XLOC_015739
TCONS_00033283 lncRNA upstream 255101 37967985 ~ 37971044 (+) True XLOC_015738
TCONS_00033617 lncRNA downstream 50985 38280982 ~ 38283096 (+) True XLOC_015751
TCONS_00031357 lncRNA downstream 140538 38370535 ~ 38371944 (+) True XLOC_015753
TCONS_00033288 lncRNA downstream 186020 38416017 ~ 38422233 (+) True XLOC_015755
TCONS_00033618 lncRNA downstream 509788 38739785 ~ 38741555 (+) True XLOC_015757
TCONS_00031365 lncRNA downstream 616746 38846743 ~ 38852656 (+) False XLOC_015758
TCONS_00031348 mRNA upstream 42504 38161318 ~ 38183641 (+) True XLOC_015747
TCONS_00031347 mRNA upstream 68806 38151308 ~ 38157339 (+) True XLOC_015746
TCONS_00031346 mRNA upstream 71189 38147761 ~ 38154956 (+) False XLOC_015746
TCONS_00031345 mRNA upstream 159972 38055529 ~ 38066173 (+) True XLOC_015745
TCONS_00031344 mRNA upstream 171663 38039857 ~ 38054482 (+) True XLOC_015744
TCONS_00031353 mRNA downstream 31751 38261748 ~ 38269675 (+) False XLOC_015749
TCONS_00031354 mRNA downstream 34967 38264964 ~ 38269411 (+) True XLOC_015749
TCONS_00031355 mRNA downstream 41395 38271392 ~ 38275658 (+) True XLOC_015750
TCONS_00031356 mRNA downstream 58311 38288308 ~ 38289751 (+) True XLOC_015752
TCONS_00031358 mRNA downstream 143275 38373272 ~ 38392575 (+) True XLOC_015754
TCONS_00031335 other upstream 347841 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 389225 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 1024558 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031307 other upstream 1082528 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 1472387 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031374 other downstream 1826902 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 2806079 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031413 other downstream 4193687 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 4356741 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 4768805 42998802 ~ 42998919 (+) True XLOC_015810

Expression Profile


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