RNA id: TCONS_00031364


Basic Information

Item Value
RNA id TCONS_00031364
length 1607
RNA type mRNA
GC content 0.54
exon number 16
gene id XLOC_015758
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38742338 ~ 38890677 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTCACGTCTCTTTCGCAGGCCTTGTGCTCTAGTGATGACTACTCCAATTCTCTTCTTCATCTGGATCTGAGTAAGAACCCTGGCATTCTGTCTGGAGAAGATGCAACGAATCTGTACCTGTTTCTGGCACAGCCGAACTGCCTGGTGCATTTGGATCTGTCAGGCACTGACTGTACCGTTGACTCTTTATTTGGAGCTCTGCTGCGGGGATGCTGTGCCGATCTCTCCTACTTGAACCTGTCGAAAAACTCCTTCTCTCACAGGAAAGTGAGAGAGACACTTCCTTCCTTCCGTCAGTTCTTCAGTTCAGCGTTCAGCCTCACTCATATCAGCCTGGCCTCTATGAAGATGCCTCCCGACGTGCTGAGGGCTCTGTTCCTCGGGCTTTCATCCAATCCTCACATCACTGACCTGCACCTGGACATCAGCGGCTGTGAGCTCAGGTCTGCTGGAGCAGGGATAATACAGGACCTTTTCCCCAGAGTCTCCTGCATCAGCACACTGGACATCTCAGACAACGGGCTGGATGGGGATCTGCTGTGTGTCATTCCTGCCTTCTCCAGACACCCGTCCCTAAAACACCTGCTCCTGGGCAAGAACTTTAACATCAAGGGCAGGGTTTTAGATGAAGTCCTGCAGAAACTGGTGCATCTTGTCCAGGAGGAAGAGTGTGCCCTGCAGAGTTTGTCTCTGGCCGACTCCAGGCTGCGTTCGAGGGGCACGGTGCTGGTAAACGCTCTAGGCAGCAATGCCTGTCTGAAAAAGGTGGATCTGAGTGGGAACGGACTTGATGACACAGGAGCGAGGATGCTCAGTAAAGCCCTTCAGATCAACACTACTCTCAGaaGTGTGACATGGGATCGAAATAACACAAGTGCTACGGGTTTCCAAGATGTGGCTCGAGCCCTGGAACATAACTTCACCCTGCAGTACATGCCTATCCCGCTCAGTGATGTCACACAGGCGTACCGCAGCTCCCCCGACAGGACAGAACAGGCACTGACCAAGATCCAGCGTGCTCTGTTGAGGAATAACCAGACTCAGCGTTTCTCTCAGAAACAGGCTCTTCGGCTGCATCAGGGCCTGGTAACTAGTACTGCAGAACAGGTGATGGAGCGTCTGTGTGTTCGCGTGcagcagcaggtgtgtgtgttgaGAGGAACGGGTGAAGGTGAAGAGCTCCAGGCTGCCAGACAGGTCCTCAAGGAGGCCAGGAACTCTCGAGCCCTGTACCCCTCGCTGTGTGAACTGGCCCATGTGTTGTCCGTAGACGGGCCGGTGAGACAGAGACTAGACTCTCTGGCAGGAGAACTTGCCAAAGCTGCTGATAAAGAACTACAGGTCATCGTGGACTCCATGGTGTCTCTGTGTCGGGAGCTGTGTCCACTTTCTTGTGCCGCAGCAGAGTGTCTTTCTCCACCACTGTCCTCCATCTCTGAGCGTGTGTCCATCCCTCGTTCATCCATCCGCACCGCTCTGATGGAGAGAGCGGCGCAAGACATCAACAGAGCTCTGGAAGAGGTGAAGCTGTCTGTCGTCTCGTATCTCACCAACTCCATAGTGGACCAGATCCTGCAGGAGCTTTACGCCACACACAAAACCCTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-183 Predicted to be located in cytoplasm and plasma membrane. Is expressed in brain; eye; gut; heart; and spinal cord. Orthologous to human CARMIL3 (capping protein regulator and myosin 1 linker 3).

Ensembl:

ensembl_id ENSDART00000147939

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033618 lncRNA upstream 62668 38739785 ~ 38741555 (+) True XLOC_015757
TCONS_00033288 lncRNA upstream 381990 38416017 ~ 38422233 (+) True XLOC_015755
TCONS_00031357 lncRNA upstream 432279 38370535 ~ 38371944 (+) True XLOC_015753
TCONS_00033617 lncRNA upstream 521127 38280982 ~ 38283096 (+) True XLOC_015751
TCONS_00033287 lncRNA upstream 804029 37999779 ~ 38000194 (+) True XLOC_015741
TCONS_00031370 lncRNA downstream 173471 39036182 ~ 39046184 (+) True XLOC_015762
TCONS_00033289 lncRNA downstream 189176 39051887 ~ 39052229 (+) True XLOC_015763
TCONS_00031371 lncRNA downstream 196924 39059635 ~ 39070308 (+) True XLOC_015764
TCONS_00033619 lncRNA downstream 923036 39785747 ~ 39792446 (+) True XLOC_015767
TCONS_00033620 lncRNA downstream 1355853 40218564 ~ 40222006 (+) True XLOC_015770
TCONS_00031362 mRNA upstream 62455 38731696 ~ 38741768 (+) False XLOC_015757
TCONS_00031359 mRNA upstream 95140 38554260 ~ 38709083 (+) False XLOC_015756
TCONS_00031361 mRNA upstream 95140 38608290 ~ 38709083 (+) True XLOC_015756
TCONS_00031360 mRNA upstream 186407 38556195 ~ 38617816 (+) False XLOC_015756
TCONS_00031358 mRNA upstream 411648 38373272 ~ 38392575 (+) True XLOC_015754
TCONS_00031366 mRNA downstream 18454 38881165 ~ 38887809 (+) True XLOC_015758
TCONS_00031367 mRNA downstream 29920 38892631 ~ 38909401 (+) True XLOC_015759
TCONS_00031368 mRNA downstream 62264 38924975 ~ 38977298 (+) True XLOC_015760
TCONS_00031369 mRNA downstream 158571 39021282 ~ 39028052 (+) True XLOC_015761
TCONS_00031372 mRNA downstream 245628 39108339 ~ 39555667 (+) True XLOC_015765
TCONS_00031335 other upstream 925919 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 967303 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 1602636 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031307 other upstream 1660606 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 2050465 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031374 other downstream 1194188 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 2173365 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031413 other downstream 3560973 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 3724027 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 4136091 42998802 ~ 42998919 (+) True XLOC_015810

Expression Profile

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