RNA id: TU438120


Basic Information

Item Value
RNA id TU438120
length 306
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G385726
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28245238 ~ 28245543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggagatgttgttacctaccctcaccacctgggggtggcccgtcaggaagtccagtacccagttgcacagggcagggtcgagacccagggtctcgagcttgatgacgagtttggagggtactatggtgttaaatactgagctgtaggtgatgaacagcattctcacataggtattcttcttgtccagatgggttagggcagtgtgcagtgtggttgcgattgcgttgtctgtggacctattggggcagtaagcaaattggagtgggtctagggtgtcaggtagggtggaggtgatatggtccttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438107 lncRNA upstream 27010 28217811 ~ 28218228 (+) True G385715
TU438106 lncRNA upstream 29501 28215480 ~ 28215737 (+) True G385714
TU438085 lncRNA upstream 66424 28163534 ~ 28178814 (+) True G385693
TU438063 lncRNA upstream 68277 28160844 ~ 28176961 (+) True G385675
TU438067 lncRNA upstream 83258 28145817 ~ 28161980 (+) True G385679
TU438124 lncRNA downstream 5480 28251023 ~ 28251335 (+) True G385730
TU438127 lncRNA downstream 8321 28253864 ~ 28256824 (+) True G385733
TU438221 lncRNA downstream 29414 28274957 ~ 28275246 (+) True G385809
TU438224 lncRNA downstream 31678 28277221 ~ 28277456 (+) True G385812
TU438228 lncRNA downstream 36818 28282361 ~ 28282569 (+) True G385816
XM_021602327.2 mRNA upstream 3568 28239115 ~ 28241670 (+) True LOC110523538
XM_021602325.2 mRNA upstream 9738 28228013 ~ 28235500 (+) False ftsj1
XM_036977196.1 mRNA upstream 9740 28228283 ~ 28235498 (+) True ftsj1
XM_021602316.2 mRNA upstream 132459 28109822 ~ 28112779 (+) True LOC110523534
XM_036977178.1 mRNA upstream 177265 28052639 ~ 28067973 (+) False LOC110523531
XM_036977197.1 mRNA downstream 12424 28257967 ~ 28261576 (+) False LOC110518653
XM_036977198.1 mRNA downstream 12426 28257969 ~ 28261576 (+) True LOC110518653
XR_005051706.1 mRNA downstream 16234 28261777 ~ 28264335 (+) True LOC118964581
XM_036977199.1 mRNA downstream 24294 28269837 ~ 28346918 (+) False ank1b
XM_036977200.1 mRNA downstream 24294 28269837 ~ 28346918 (+) False ank1b
TU437511 other upstream 340507 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 538160 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 561845 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 1581625 26661838 ~ 26663613 (+) True G383794
TU435244 other upstream 1784703 26437659 ~ 26460535 (+) True LOC110522865
TU438217 other downstream 171062 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 680734 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 1496257 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1651443 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 2041408 30286951 ~ 30287824 (+) True G388019

Expression Profile