RNA id: TU439475


Basic Information

Item Value
RNA id TU439475
length 211
lncRNA type intronic
GC content 0.51
exon number 1
gene id G386964
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29377080 ~ 29377290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggaggaggggggagagagaagagaaaagcagGGAGTGAAAAGAGCAGGACAAGTGGAGGAAAAACAGCCTCAGTGATGTTTATTTGTACGTGAATTTACGAGGAGGGACTGAGTGTTTCTgattttctccccctcctctcgcAGGCTGCACAGGCATGGTCTGTGACCCCATGActcagagttgtgtgtgtgtgtgtgtgagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439473 lncRNA upstream 9402 29367557 ~ 29367678 (+) True G386962
TU439470 lncRNA upstream 12096 29364712 ~ 29364984 (+) True G386959
TU439428 lncRNA upstream 81691 29295178 ~ 29295389 (+) True G386918
TU439344 lncRNA upstream 99423 29276801 ~ 29277657 (+) True G386846
TU439305 lncRNA upstream 179717 29197131 ~ 29197363 (+) True G386815
TU439476 lncRNA downstream 404 29377694 ~ 29377939 (+) True G386965
TU439484 lncRNA downstream 9980 29387270 ~ 29387475 (+) True G386973
TU439485 lncRNA downstream 11761 29389051 ~ 29389363 (+) True G386974
TU439486 lncRNA downstream 12548 29389838 ~ 29390115 (+) True G386975
TU439487 lncRNA downstream 13010 29390300 ~ 29390603 (+) True G386976
XR_002473468.2 mRNA upstream 64752 29304337 ~ 29312328 (+) True mtfp1
XM_021602393.2 mRNA upstream 65357 29304337 ~ 29311723 (+) False mtfp1
XM_021602390.2 mRNA upstream 114439 29254638 ~ 29262641 (+) False LOC110523578
XM_036977228.1 mRNA upstream 114439 29255030 ~ 29262641 (+) True LOC110523578
XM_036977223.1 mRNA upstream 189112 29176622 ~ 29187968 (+) False LOC110523576
XM_036977237.1 mRNA downstream 335638 29712928 ~ 29721236 (+) False LOC110523583
XM_036977236.1 mRNA downstream 335641 29712931 ~ 29722688 (+) False LOC110523583
XM_036977240.1 mRNA downstream 335642 29712932 ~ 29722688 (+) False LOC110523583
XM_036977238.1 mRNA downstream 335643 29712933 ~ 29722688 (+) False LOC110523583
XM_036977239.1 mRNA downstream 336409 29713699 ~ 29721236 (+) False LOC110523583
TU438959 other upstream 446149 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 959525 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1472349 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1670002 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1693687 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 364510 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 519696 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 909661 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2583065 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2842891 32220181 ~ 32220533 (+) True G390393

Expression Profile