RNA id: TU439672


Basic Information

Item Value
RNA id TU439672
length 396
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G387138
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29477487 ~ 29477882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcatggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaccattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcatgcccaatgtttcagtttttgatttgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439456 lncRNA upstream 31349 29445419 ~ 29446138 (+) True LOC110523581
TU439509 lncRNA upstream 58343 29418878 ~ 29419144 (+) True G386998
TU439506 lncRNA upstream 60785 29416469 ~ 29416702 (+) True G386995
TU439501 lncRNA upstream 64018 29413217 ~ 29413469 (+) True G386990
TU439498 lncRNA upstream 67330 29409935 ~ 29410157 (+) True G386987
TU439684 lncRNA downstream 8308 29486190 ~ 29486413 (+) True G387150
TU439694 lncRNA downstream 15692 29493574 ~ 29494193 (+) True G387160
TU439695 lncRNA downstream 16391 29494273 ~ 29494782 (+) True G387161
TU439697 lncRNA downstream 17053 29494935 ~ 29495355 (+) True G387163
TU439701 lncRNA downstream 22361 29500243 ~ 29500445 (+) True G387167
XM_036977231.1 mRNA upstream 31307 29341278 ~ 29446180 (+) False LOC110523581
XM_036977232.1 mRNA upstream 31307 29342866 ~ 29446180 (+) False LOC110523581
XM_036977233.1 mRNA upstream 31307 29342866 ~ 29446180 (+) False LOC110523581
XM_036977234.1 mRNA upstream 31307 29342866 ~ 29446180 (+) False LOC110523581
XM_036977235.1 mRNA upstream 31307 29342866 ~ 29446180 (+) False LOC110523581
XM_036977237.1 mRNA downstream 235046 29712928 ~ 29721236 (+) False LOC110523583
XM_036977236.1 mRNA downstream 235049 29712931 ~ 29722688 (+) False LOC110523583
XM_036977240.1 mRNA downstream 235050 29712932 ~ 29722688 (+) False LOC110523583
XM_036977238.1 mRNA downstream 235051 29712933 ~ 29722688 (+) False LOC110523583
XM_036977239.1 mRNA downstream 235817 29713699 ~ 29721236 (+) False LOC110523583
TU438959 other upstream 546556 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1059932 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1572756 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1770409 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1794094 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 263918 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 419104 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 809069 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2482473 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2742299 32220181 ~ 32220533 (+) True G390393

Expression Profile