RNA id: TU439684


Basic Information

Item Value
RNA id TU439684
length 224
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G387150
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29486190 ~ 29486413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgtggatgttgattaaggcagccccccgcacctttctgattcagaggggttgggttaaatgtggaagacacatttcagttgaatacattcagttggacaactgactatgtatccccttttccctttccctttcttccACTACCCCCACGGCAGGCCCTGGCTCCTCGCCCCTCTCAGACAGTTAATCTAGAACTGCCGGGGCCTctcagagaagagggagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439672 lncRNA upstream 8308 29477487 ~ 29477882 (+) True G387138
TU439456 lncRNA upstream 40052 29445419 ~ 29446138 (+) True LOC110523581
TU439509 lncRNA upstream 67046 29418878 ~ 29419144 (+) True G386998
TU439506 lncRNA upstream 69488 29416469 ~ 29416702 (+) True G386995
TU439501 lncRNA upstream 72721 29413217 ~ 29413469 (+) True G386990
TU439694 lncRNA downstream 7161 29493574 ~ 29494193 (+) True G387160
TU439695 lncRNA downstream 7860 29494273 ~ 29494782 (+) True G387161
TU439697 lncRNA downstream 8522 29494935 ~ 29495355 (+) True G387163
TU439701 lncRNA downstream 13830 29500243 ~ 29500445 (+) True G387167
TU439723 lncRNA downstream 32830 29519243 ~ 29519539 (+) True G387189
XM_036977231.1 mRNA upstream 40010 29341278 ~ 29446180 (+) False LOC110523581
XM_036977237.1 mRNA downstream 226515 29712928 ~ 29721236 (+) False LOC110523583
XM_036977236.1 mRNA downstream 226518 29712931 ~ 29722688 (+) False LOC110523583
XM_036977240.1 mRNA downstream 226519 29712932 ~ 29722688 (+) False LOC110523583
XM_036977238.1 mRNA downstream 226520 29712933 ~ 29722688 (+) False LOC110523583
XM_036977239.1 mRNA downstream 227286 29713699 ~ 29721236 (+) False LOC110523583
TU438959 other upstream 555259 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1068635 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1581459 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1779112 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1802797 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 255387 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 410573 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 800538 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2473942 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2733768 32220181 ~ 32220533 (+) True G390393

Expression Profile