RNA id: TU445807


Basic Information

Item Value
RNA id TU445807
length 1926
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G392776
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 34147474 ~ 34150795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggagaacttgcacaattggtggctgactaaatatttttttgccccactgtatcttgattacataagtattcaacccccaatgtcaatacatgttagaatctctgagtctatcTGGGTAAATATTTGTCCATTATTCttcaaattcttcaagctctgtcacatTGGCTTGACCATTGCTAGACAATTTTACATctggccatagattttcaagtagatttaagtcaaaactctaaCTCTGCCACtctggaacattcactgtcttcttggtatacaactccagtgtagatttggctttgtgttttaggttattgtcctgctgaaaggggaattaatctcccagtgtctggtcgaaagcagactgaaccaagtttccCTCTAAGATTTAGCCTCTTGCGttaatttttttatcctgaaaaactccccagtccttaacaactACAAGCATACCCAAAACATAATGCAGTCACCACTATACTTGaaatataaagagtggtactcagtaatgtgttgtattggcttgaaaatatggagggCAGTACTCAGTAATTCATTTGTTTAAAAGAATTAtccaaaaacataattccactttgacattatggggtaaaaataaaataacaaatgcaACATTCAACATTTGATCCATTTttaatgcaggctgtaacacaacaaaatttgaaaaaagtaaacgggtgtgaaaactttctgaaggtactgcatATCAAATTATTTCACATTAGCTCTATGCTTGTCAAATAAATAATATTATACAGTTATCAGCTTCTGAGCTATTCCATTAGAGAAGAATACAGAAATTGAAATAGGCTAACAAGTAGTGTGTTAAATCAAATTGACATGCATTTAACTCTAAAATGACATGGACGGTACACCAGTGCCATGGTGAATAGAGAAGAGTACAATATATAGTATTTTCCTACGGATATTCCACATTTCTTCATGGTCACACAGCAAGTAGCCAACAATGTAGGTTTGGTTTGAATTAAATTAGGTGTGTTTGAAAACTGATCTTGACTAGGTTTGGAAAGTACATTTATGATATGCTGTGTTTTTCCCAAAGACCAGGGAAAGCCTGCTAGCGCAGCTTTGTGATATCGCCAGGCAGTGCTTACGCACTCACTCTTTCAAACACATACATGCACCCTtccacagacacatgcatacatcCACAGACACACTTGCACTTAGATGAGTGTGTGATGGATGAGCCAGTCATACAACGATAACTTCCCAGTGTAAGTGATTTAATCGCTATCGCTCAATTGCACAGTTGAAAGCTTTTTGTCAGACACAGGCTCCCTGCTAGGGGTAGCTCTCACACCCAGCGGTCATTGGACGTTGGTACTGGATCTCAGTCGGTGCCATGACATGTTATTTGTCTTCACTATCACTGGTTTTGTTTCAACCAGCCCAGATTAAATCAAGGCCAGCAGCATCACAACTCTTTGTATGTGTCCATTTGTGGGCCCCCGAATGGGTCACAGGACAAATGGTCCCTGGTGGTTCAAAATTCCTAACCGCACATCAATTCAATGTCCATTTgttggcatagtatagtatctcACCTGATataataccaacacacacacagggagagctTAGAAAACAGATGCTATGGTAGGTGAATATGGGTAGTTCCTTCTCACTGTGTACATAGTATGTCATCGGCAGCTTAAGTCATGCATGTGCCATCTGGGGGTTTGGCAACATGCCATGTTAGCTGTTTTTTCTGGGGTCATTTAACACGAAGGGATGAGTTGACTCTGTTCTGGGTGAGGAACTGGCAGTCCCATACAGCTTTTAATGTAAAAAAGGTGGACCGGAAAAGGGAGCTAAGATCTTTCTGTCAggtcctgtctgtgtctgtctgatgaACTGTAATGCTAAGGCTCAGGGTATTAAAGTCTGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445806 lncRNA upstream 148 34147706 ~ 34148701 (+) False G392776
TU445776 lncRNA upstream 56663 34091852 ~ 34092186 (+) True G392756
TU445033 lncRNA upstream 59055 34089095 ~ 34089794 (+) True G392063
TU445031 lncRNA upstream 59941 34088293 ~ 34088908 (+) True LOC110523649
TU445205 lncRNA upstream 69739 34078854 ~ 34079110 (+) True G392226
TU445841 lncRNA downstream 31945 34182740 ~ 34183700 (+) True G392804
TU445842 lncRNA downstream 32972 34183767 ~ 34183976 (+) True G392805
TU445843 lncRNA downstream 34524 34185319 ~ 34185533 (+) True G392806
TU445939 lncRNA downstream 71361 34222156 ~ 34222491 (+) True G392900
TU445950 lncRNA downstream 84379 34235174 ~ 34235518 (+) True G392911
XM_036977324.1 mRNA upstream 1523 34107180 ~ 34147326 (+) False si:ch211-127i16.2
XM_036977325.1 mRNA upstream 1523 34107180 ~ 34147326 (+) True si:ch211-127i16.2
XM_036977310.1 mRNA upstream 59865 33848770 ~ 34088984 (+) False LOC110523649
XM_021602552.2 mRNA downstream 285991 34436786 ~ 34448792 (+) True adra1ab
XM_036977338.1 mRNA downstream 936031 35086826 ~ 35198991 (+) False LOC110523660
XM_021602558.2 mRNA downstream 1203303 35354098 ~ 35357244 (+) False si:dkey-242g16.2
XM_021602557.2 mRNA downstream 1203309 35354104 ~ 35357244 (+) True si:dkey-242g16.2
XM_021602568.2 mRNA downstream 1317145 35467940 ~ 35480670 (+) True stoml2
TU445804 other upstream 148 34147474 ~ 34148701 (+) False G392776
TU444741 other upstream 787508 33360957 ~ 33361341 (+) True G391805
TU444420 other upstream 985869 33158826 ~ 33162980 (+) True G391513
TU443183 other upstream 1928316 32220181 ~ 32220533 (+) True G390393
TU442960 other upstream 2188104 31960355 ~ 31960745 (+) True G390184
TU448046 other downstream 1754317 35905112 ~ 35905781 (+) True G394882
TU448080 other downstream 1816142 35966937 ~ 36004829 (+) True G394910
TU448071 other downstream 1882465 36033260 ~ 36034767 (+) True you2
TU448184 other downstream 2052106 36202901 ~ 36206616 (+) True G395005
TU448219 other downstream 2129505 36280300 ~ 36301290 (+) True G395034

Expression Profile