RNA id: TU473986


Basic Information

Item Value
RNA id TU473986
length 1965
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G418190
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56838520 ~ 56840783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTATTAATAATGAAACAAACTTACATTCAAACACAATTCACAGAAAACAGGGAAAAACTTTTCACCGCTTCAATAGTGATTACGAACAGTCATAAACAAAACAAATTAAGTTATATACAggctttgattttttttaaaaacagctTTTTAAACACGTACCAAACCGGCTCTCATATCCCACAAAATTTAAGTAAATGGTGGGGAACAAAAATACCCCACACACATTGCAACCTctccacacatacaaacacttcTAATAAGGGTAGCCCACATTAGAGACCTAAATAACAGTCAAAACAACGAGGCAAATACGTGTTGCTTTCATATTGTATTACATTACCACAACACTGTCTATTCCTTTCCTTGGGAAACCATAGTGTCGTTTCTGACACACATCATACTGATATAGTTCAAAGTTCATATATACAATGTCAATACATTGTATTCACTTTTTTTTAAGTTCAATTTCTTATCACTGCTAATTTCATTGTATGATTTAGTTTGAAGAAATGTAACATATTGCATTCATCCTACTGTTGTGACACTTAGACATCAATGGGTTTAAATGAAAGCTGCCAAGAAATTATAATGGAGCAaattacagtgagatgcagtttGATTATTACACCTATTACAGTTTTTTTGCGTAGGTTTCTATAGAAATGGGAACCTAAGGCCCAACGGATATACACCGtaaaacacaaacatacacactaaGTCAATGtttgacacatacacacatatccaGAAGGCCCAACATCCAACCACAAAGGTGCGTCTCTATTTCTTACCCTGTTCTAGTAACTTCCAAAGGTCATAAGGCCTTGTCCCCTGTCCTTTGACTGAGGCCGTGTCTACACTGGACACTTACATGCGACTTCTGCTATCAGAATACGAAGATCGCATTGAAAAGACGGGTCTAGGCGCACAAAAGTTGCTTTGTGGTCTGATTGTGTTCAGATCGAGAGGCACCTCAAAAATCCTAGCCAACTACCTAATATTTAGACAAATTATTTTTTGTTTGACTAGAGATATGGTAACCCATTTGCAATCCCTTTAGCATTGCTTGTTAGCTTGCTGTctagctacagaggttagctgAGTAGTTAGCTACTGCCATCACTTATTGTGTATTATCATATTTAGCCTATTCCACCGTTTGTAGACTGCATACTTGCATTTGAATATAGCGCGGGAAAAGGGTATCTGTGGACACAATGGGGACGCAgtagacacatttaaatgtaggtGCAGATGCATGACATGTTCGGAATTCCATGGTCAGAACTCTATGATCAGAATACTAAAGCTGCATGAACTGTCAAGACTAGACACGGCCAAAGGCCTGGACACGGGACAATGGGCAAGGTTCTCGTCTGTAGGCCAGGAGTTCACTCCAGGTGAGTCTGTCCCTTGGTATGTCTTTACATCATGAGTGTCAAAGTCATTTTGCCTGAAGAACCATTTTTAGACAGTACATGTTCATGTTGGTAGCACAAGTGGGGGCCGTAATCTGGCTCCCGGGCCACAGGTTTTAGACTCCTCTAGTCTATGCAGTGCTGGGCTTACACTTGGCCAGCTCATAGGAGCCCTTCCTCCTGGCTCTCCTAAGATTGTCCAGGACTAGGACTGTGGTGGTCACCATCATTCCCACGCAGACAGCAGGAATGACTATCTGGTTCCAGTCAGGTGAAGGACTGGAATGCTTCTCCATGACGTTAATGCTGAAGATCTTAGTCTCGTAGCCCAGGTCATTGGTCACATTCACCTGGTATAGGCCTGTATCTTTGGGCGTAAGGTTCACCAGCAGGAAGTTCCCATCCGGGGAGTAGAGCTCTGTGCCATTGTCCAGTTTTCTCAAAACCACCACAGGTGGGGGGAAGCTAACAGAGCGACAGCATACAGTGACATTTTGGCCCTCCTGAACCTCAGTGGACGGATAGACCAGGACTGTTGTATTCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473984 lncRNA upstream 1909 56836253 ~ 56836611 (+) True G418188
TU473983 lncRNA upstream 2463 56835767 ~ 56836057 (+) True G418187
TU473980 lncRNA upstream 4658 56833637 ~ 56833862 (+) True G418184
TU473979 lncRNA upstream 4940 56833376 ~ 56833580 (+) True G418183
TU473977 lncRNA upstream 8559 56829722 ~ 56829961 (+) True G418181
TU473985 lncRNA downstream 643 56841426 ~ 56845422 (+) True G418189
TU473990 lncRNA downstream 5304 56846087 ~ 56847202 (+) True G418193
TU473998 lncRNA downstream 12271 56853054 ~ 56853399 (+) True G418201
TU474013 lncRNA downstream 23191 56863974 ~ 56864224 (+) True G418210
TU474011 lncRNA downstream 23706 56864489 ~ 56868205 (+) False G418209
XM_021603443.2 mRNA upstream 49867 56779858 ~ 56788653 (+) True dph5
XM_021603437.2 mRNA upstream 136364 56696618 ~ 56702156 (+) False serpinc1
XM_021603438.2 mRNA upstream 136364 56696637 ~ 56702156 (+) True serpinc1
XM_021603435.2 mRNA upstream 149931 56658922 ~ 56688589 (+) True rc3h1a
XM_036977915.1 mRNA upstream 157232 56658921 ~ 56681288 (+) False rc3h1a
NM_001124203.1 mRNA downstream 103060 56943843 ~ 56956322 (+) False LOC100135807
XR_005051970.1 mRNA downstream 114541 56955324 ~ 56955462 (+) True LOC118964777
XM_021603458.2 mRNA downstream 175145 57015928 ~ 57037694 (+) True LOC110524109
XR_005051954.1 mRNA downstream 185542 57026325 ~ 57026460 (+) True LOC118964761
XM_036979052.1 mRNA downstream 198334 57039117 ~ 57061390 (+) True nwd1
TU473915 other upstream 108699 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 209903 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1513249 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 2225378 54590074 ~ 54613142 (+) False G415946
TU474058 other downstream 83141 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 103055 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 524581 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 1043597 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1572340 58413123 ~ 58416776 (+) False G420117

Expression Profile