RNA id: TU475189


Basic Information

Item Value
RNA id TU475189
length 1676
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G419276
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57605581 ~ 57609228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agCCAATGTGAGAGAAAGACGGCTTCTTCCCCCACCATCATTTTAGGGACACATAGTGTCAGTCTGCCCTCATgcatactctctctccctcatgttcTTTTGATTGCTCCGCGCTGTAGTTTTACACCAGAATAACTTCAAGGAGTCTTTGTTTGGGACCACGAACATGCATATGGGCCGCACGTCCATTTTTAGAGATTCTCCCACCAATCAGAGTCGTTGCGCGGATGCCTCGACAGAGGGCGAGAAGAAACAGCTGCCTCGCATGAACTTACCCTCGACGACTCACCAGCCGCCACTGCCTGTGCCATCGGCTGCTCTGCTCAGTCAGTGGAATCAGTCTGTTCGGttggtctctcctctccactgagCTTTCAGAGGACTCCTGGCTGGCACTGGGAGACCAACAGGAGACATGACTACATCCCAAGATGTCCCCTTGTTTCATTGTCTCCTGATCTGAAAGGACTTGGtagagaagaggaatggagggtttgaaagagagagaaaaatagaaagagaAGAATGTCAGGGTTTTCAATTTCTATTCAATTTCTATGTTGTGCACAAAAATTCAGTCCTTTGCCTGAGTGCATGTTTGCAAAGaaaaggagacaaggaaaggaagtgATCTAAGCATTTTGGGATAAAACAGCCTGAATGTTAGGCCTAATCTCCACCCTCAGAAGGTCTAGTTAAGAGCCTTCCCACCCAGAGCCTATAAGTGCTCTCAAGTCTCGCCAGCATTCACTTCAATCAAGCCTAATTCAATCACACGTCTCTTATGCAACCAACATTTACAGCACTTCAAGACTGGCGTTTCAAAACTCTGATTTTAAAGGGCACTTGATTCAGGTTGCCCGGTGTGCGACGTGGGCGGGATATACGCTTAAGGGAAAATGGAATGTCTCCAAAAATGCACACCAGGCGAGCTAAATCCCATATTGAGAAAGCGTCATTGTGGCAACCAGATTGTCCTGGCGTGACGGGGACGTAGCAATTGCGGGGGAAAAACCTCTAATAGTCAGTGATGAGAGACTAAACTCTCCCCTACtgttactgtatactgtaaaACAAGATCATGAGGCGACCATAAAACACACTACAGCCTTGGTGTGTGGGCCTAGGAGTCCAAGAAGATGATTCTAAATCTGTTCAACCTATCTTTTCTACACTGTCCCCAGGAAACTGTCTGACGATATTAGTATCAGTATCTGCTACAACATGAAAGATACTGCTTCTCTCGATTTAATGCTCTTTGACAGTATCTTTTGGCAACCTTATTGCAGAAGCTGAGAGTAACTGTCAAATGGGATGTGTGGATCCCCTGAGGCTCATGGAATAGAAGTCAAAGCCCTTCTGTGTTGGGTCTTTTGAGTACGGTGAGCAGGGTAGTAGTCCTAAGGGGTATTACCTCACAGTTCAGGCTGAGGCACACCTGTAGGGAGAGGCTGTTCCTCCGGTTGTGAGATCGAGAACCATGTGTTGATACCTCTTTGAATACAGACGTCCATTTAACCCTGAAAAATCTGCCCTGTGCAAGAGATGTATTCAAATGTTCCCGAATGTTGCGGATGAAAATATTGTGAATTGAGATGAGCCAATGTCCTACTTCACGACATGAAagcattatacagtgccttgcgaaagtattcggcccccttgaactttgcgac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475061 lncRNA upstream 226048 57379324 ~ 57379533 (+) True G419159
TU475031 lncRNA upstream 247374 57357989 ~ 57358207 (+) True G419135
TU475028 lncRNA upstream 254607 57350065 ~ 57350974 (+) True G419132
TU474247 lncRNA upstream 374180 57227854 ~ 57231401 (+) True G418428
TU474215 lncRNA upstream 435111 57170235 ~ 57170470 (+) True G418399
TU475191 lncRNA downstream 1555 57610783 ~ 57611584 (+) False G419278
TU475192 lncRNA downstream 1555 57610783 ~ 57611756 (+) False G419278
TU475193 lncRNA downstream 1555 57610783 ~ 57611633 (+) True G419278
TU475221 lncRNA downstream 43936 57653164 ~ 57653374 (+) True G419300
TU475222 lncRNA downstream 46363 57655591 ~ 57655810 (+) True G419301
XM_021603473.2 mRNA upstream 178258 57380097 ~ 57427323 (+) False LOC110524121
XM_021603474.2 mRNA upstream 178258 57380097 ~ 57427323 (+) True LOC110524121
XM_036977937.1 mRNA upstream 237954 57352343 ~ 57367627 (+) False LOC110524119
XM_036977948.1 mRNA downstream 18077 57627305 ~ 57636788 (+) False tmem259
XM_036977947.1 mRNA downstream 18080 57627308 ~ 57641111 (+) False tmem259
XM_036977946.1 mRNA downstream 18081 57627309 ~ 57641111 (+) True tmem259
XR_005051768.1 mRNA downstream 232694 57841922 ~ 57851518 (+) True LOC118964626
XR_002473545.2 mRNA downstream 265577 57874805 ~ 57906660 (+) True LOC110524134
TU475029 other upstream 238244 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 647416 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 680405 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 875760 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 976964 56617890 ~ 56628617 (+) True G418077
TU475377 other downstream 275152 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 803895 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1333500 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3085029 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 4112309 61721537 ~ 61722024 (+) True G423922

Expression Profile