RNA id: TU476094


Basic Information

Item Value
RNA id TU476094
length 2955
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G420117
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58411240 ~ 58418268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGACACTTGTACCAAGGATGGCCGGCATCCCTACTTAAACAAAAGCAGACAGATGTTCAAACGAAGCAAAGTGATGTGAGCCTGCAAAATTGTTCGGATTCTCAGGTACACAAGCACTTCTCGGCAAACACATTCAATAGTCCAACCCAACCATAGGCATATTCACATCCTAGCCATCTATTTACTCAACATTTGCTTTTGTTTGAATAGGGCGCTAGGCCATACAGTTAGAACCACAAAAAGAAAAACTAGTCAGACAAAACTGGCTTCAAATGAAACAAATATGAACACCACCATACTCTCCATATTCACATAAAATGGACATTATAGCACTGTACCTCCAGTATTTCTAACCCAATCACAGAATTAAACAAAAGGGAAAGAATTAATGTGGACATGTTTTTGCATATGTGTCCATTTGACCCTGTAAGTGTGTGACAATGTGTACAGGTACCCTTGTCTACAACTAAGTCAGCATAGAGGAGTTCCGATAGCAGACAAAATGGAAAATGTGTTAAAATGAGGGTTAAATGCAAGAGAGACAAACCACTGTAGACTAATGGACTATGCGTAGCCTAACCGTCTAAGCTTCACTCCCAGCCCTCGATGAACCACATGCATCCCCCTTATGACGTAGATGACGAAAGAGATTATTTTACCGCGCAGTGGTGAGAAAGTGAAAAACATTAGACATACACATCCCGAGAGTGGAAGATTTCATCCCAGTACACACAGAAAAATACCTACAACTATTAGGAAAACAGACCAGTTGTCTATTTGTGGTTCAGGGTATGATGAGTAGGAGTCAGAGGAAAGTGCAAAAGTTGACTTTGCACACAAATGCTCTATTAGACACACTGTAGAAACCCCAGCACCGGGCTATATAAACCCAGAGTACCATGCAATCAAGTATGATGTGTCCTTGTCTCATGCAGCATGCAGCTAACAAAGGCGTAAACAAGAGAAATGCATCATACTGTATTCTTATAGAACAGTTCGGAAGTTTTACAGTTCCAAAAAGGTACTTGAGTAAAAGCCTTTAAAACGGTGTAGTGTTGAAATGCACAGACTGCAACACAATACCTACACAGTACATAGAAACACAGGATTTACAAAAGACCATTTGTTCAAATTGTACATAGCATGTTCGTTGTAAACAATTCTGACCGGCTTTGCGAGATAGCATGTCCTGGGTATAATTCTATTTCACCACCACCGACTTCTGAGTAGTTCATCAAATCTGAAAATATAGACCTCTTTTGAGGATCTGTTGAGACGTCGAAAGAACATCCCCTCCGCCAACGCTTGATATATACAGACAGTTACATAACAGCAAGTACAAATGGACACAATATCAACCTTCAGAACTACTGTAGTGTAGAAAAGCCCAAAATGATGGTGTTCAACACAACATCACTAATTGTACAATATGCATTGCAATACTGATGTGATTCCCCAACCAGCTTCATCCTTGAGGCACATTTTTTACAGCCATTGTTGTTCACATCGCTTGTGCAACTGGTATGTTGGTATACTCCAAAATATAATAATATTAAGTATAATAATAATGCATATGGCATTAACAGACTCCGATATAAAAATACatagtgagggaaaaaagtatttgatcccctgctgattttgtacatttgcctactgacaaagaaatgatccgtctatcattttaatggtaggtttatttgaacagtgagagacagaacaacaacaaaaatccagaaaaacgcatgtcaaaaatgttataaattgatttgcattttaatgagggaaataagtatttgacccctctgcaaaacatgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttctcgtagttggccaccaggtttgcagatcttctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattgtctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagtcactcctttgttgccttggccatgtgttttgggtcattgtcatgctggaatacctatccacgacccattttcaatgccctggcagagggaaggaggttctcacccaagatttgacggtacatggccccgtccaccgtccctttgatgcggtgaagttgtcctgtccccttagcagaaaaaacacccccaaagcataatgtatccacctccatgtttgacggtgaggatggtgttcttggggtcataggcagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcaatcagttgtcctctgaatcattcagatgttcattggcaaacttcagatgggcatgtatatgtgctttcttgagcagggggaccttgcgggtgctgcaggatttcagcattcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgattcctcaccattCTCATAATCATTgtaactccacgaggtgagatcttgcatagagccccaggccgagggaaattgacagttcttttgtgtttcttccatttgcgaattatcgcaccaactgttgtcaccttctcaccaagctgcttggcaatggttttgtagcccattccagccttgtctacaatcttgtccctgacatccttggagagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacaaactgagattaggagcaccctttaagagtgtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagacatctttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476075 lncRNA upstream 21455 58389485 ~ 58389869 (+) True G420101
TU476067 lncRNA upstream 31019 58379916 ~ 58380305 (+) True G420093
TU475990 lncRNA upstream 37333 58373120 ~ 58373991 (+) True G420025
TU476032 lncRNA upstream 141898 58269119 ~ 58269426 (+) True G420062
TU476025 lncRNA upstream 164786 58245990 ~ 58246538 (+) True G420055
TU476102 lncRNA downstream 2908 58417186 ~ 58418268 (+) True G420117
TU476105 lncRNA downstream 4086 58418364 ~ 58418789 (+) True G420118
TU476106 lncRNA downstream 6142 58420420 ~ 58420673 (+) True G420119
TU476107 lncRNA downstream 6748 58421026 ~ 58421360 (+) True G420120
TU476109 lncRNA downstream 8822 58423100 ~ 58423510 (+) True G420122
XR_005051769.1 mRNA upstream 6435 58401429 ~ 58404889 (+) True LOC118964627
XM_021603511.2 mRNA upstream 41234 58312332 ~ 58370090 (+) False LOC110524143
XR_005051587.1 mRNA downstream 66659 58480937 ~ 58482309 (+) True LOC118964530
XM_036977960.1 mRNA downstream 69765 58484043 ~ 58491225 (+) False LOC110524147
XM_021603532.2 mRNA downstream 85827 58500105 ~ 58505933 (+) False LOC110524149
XM_021603530.2 mRNA downstream 85829 58500107 ~ 58505933 (+) True LOC110524149
XM_021603534.2 mRNA downstream 98651 58512929 ~ 58539074 (+) False LOC110524150
TU475377 other upstream 511676 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1043987 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1453159 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1486148 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 1681503 56726185 ~ 56729821 (+) True G418119
TU476694 other downstream 528450 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2279979 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3307259 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3691245 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3868874 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile