RNA id: TU483857


Basic Information

Item Value
RNA id TU483857
length 4455
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G427121
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64701909 ~ 64706624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTCTTTGAAGGAGAAGGCTATGAAAATCATTTTCATGTTTGAATGAGGTTCAGGCAACAGTGGTTGAAATGAAACATAGAAAAGAGAAATATGGCTAAAATACTGTAAATCAATAACCATTAGGACCCATTTCTGAAGGGCTTTGCATTAATACCATTTCCTCCCCTTCCACCCCCAACACATGCAATTAAAATGACATTTAAAAACCAAAGTTCATCATTAATCCTAAATACAGAGTAAAGTTGTCCATTTATCTATCTTAATCACGTACTTAGTGTTTATTTGTTTTAAAAATTTGACCATGAAATACATAGGTCCTTTTTATGATTTTTCACATTGGCACTTGTTTAGAGTCTGGCTCTACAAAGAATGGGGATTGGCACACTCATTATTGTACATAATTTACATTTGTTATACTTAGAAAAGAAAAGACATTACTTTCAATTTAAACAACACTAGACAAAGTTTATTTAACCTCTtatttaaaaaatctatcattaaGTGGTCCTAAATACAAGTGTTCAGGTAACATCTGACTTACAAAAGAAACAAAAAGATGCAAAGATAGCTTTTAGTATTTCTATGCATCAATCACATCAGTATCAATCTCAAGCAAAAGCATTAACCATCAAAAGTGTACACACATCTCATAGTACCGACAAACGTGCTTGTAAGTTGCATGAATGCAGGCAGTCCCATTGCTGCAGAGCAGGTTCAGTGCATTGACCCGgaagaaataaaatataatagaTCAAGTAAGGGGAGAGAACAGCTGACATTCTAAAACAACACTATATTAATTAATTCACCGATTAATCCAACTGCTATAGTATATTGCCCTTTCGGTACCTTCACTTGGCAAAGTATTACAATAAATAAAGCTGAAGTATAACAGGCTTATTTCAAGGGACTGTCTGGAAGAGTGGTCGCAACTGTTTGTATATAATGCTATTCAGTCTATGGCACGAACTTGCTTCTAGTAGTGTATCCCTTCAACAAACCCCACAGTGCTGGTTTTAATGCTGACGGTACTTCTCTTACGTGTTCTCTTACTAGTTATTGTGACGTTCAATTAATGTGCTATACAGGGTGGACATAACACTGAGCTACATACAACACACTGTCCATAGTCCATGTGGTGAAAACCAGGGTACTTTGTGTAAACCGACACACTGACTCTATGCCCATGTTTAGaaacagcagggagggagggaggcctgCACTGGaccttttttttggggggaggggctgAGTAACCACACAGCACATCATACACCTCAAACCCACTGGACCACAAGCTGATGCAGATGCTTACAGGAAATAGAGTATAATGAAACAAAAGAAAAGCACAATCACTTACTGGAGGGTTACACGCATGAAAAGAGCCCAGCATGAGAATAACTAAACCCTACTCTACCTATGCAAGTAAACCACAGGTCAAAAGGGGATGACTGTGCTTCTTGAGGTAAGAGCAGCAGAGAAGCTGTAACCACTAAAACAATTAAAAAACAAGCTGCCGTGTTGGTGGTGATCTAAAGTACCAGAGGCAACATCTCAGTCCAGCCTGCTCTGACAAGAGACCTTCGTACTCCTGAGAGAACTGACAACTTGCCCACAATCTCAACAAGATCATGGCAAATGCAATCACGAACTAAAGTCAAATTTTCAAATGTCTAATTAAGTCAAAAGCCTCATCTGCAGTTGCACAGGAAGCATTCATATTTCTGCTTTGTACGGACACTTCACAAATAATGTGGTATATAAAGTATTGGCTGTGGGAAAATTAATTAACAAAGaaaggccttgaaatgcatccacccGTGGCTTGGCCAAATGACAAGGCATTACAAAACGTCCAACATGTTTAAAACTTTTGTAACGTAATACTTTCCACCTCCAGTAAAAGCAACATTTTTAGGAGGAGGCGAGTTTGATAAGGACTCACCCCGTTCCTGTCCAAAGGACCAAAAACTGCCTTTTAACAAAGTGACTTAACATGTTTTCATGTCTTAAAAATGGTTACCTTGTTAAATAATTTACATAATTGTATGTTTTTACAAGGAAAAGTACTTTTATTCATGGTTGTTTTTAACATGTACTTTTTAACTAAtttaaatgttgtttttatgTGTATAAATGTTGTAAATATATAAATGAGCTGTTTTAAAAAAGGAAATGTGATAACTtttccaaaatatatatattttttatagaaATGTCCATTAGTTACACCAACCCTGGTGTTTATGTTATGAGGCAACGTATAGGGAAGGTACAAGTTGGATCTTTCAGCCAGACTAGTATACAGTGGACATATTAGTAAAGGGGACTGAAGAGTATACTCAGGATATACCCAAAACATCCCTAGGTTCAATATACTTGTAAATGCACAGCTAGAGCTTAAACAGAGCACAGATAACTTAGCAGGGTAATTACTTGCCATGTAGAATGAGAAATACTTGGCACCAAACATACAAGATATGAACAACAAGTTGGTCATGTCTGTCAAAACTAAAGTTTTCTGTTAAGTTTCACCTGACCATTCTAACCCAAAGCTCTTTGGAGTGCAAATAGCACTGTGGCAATCAAACGTCTTTCTACAAAATACCCCTGTCCAATCCCAGTCATGGTCATTCTTAGTGTACAAAAGGTGAAGCATAGAAACATGATTAGCAGGGGATGTAAAACTAACTACCCACAACAATGGAGTAATGTCACGCTGAAGAAGACATGATTCGTGACAAGAGTGGCAGGTGGAAAAGGAAGAGCACACTGAAGATTGGCTGAGACAAGCAGCTGTGAGACCCCCATCACCTTGTGGTTTTACTAGGCTCTGCTCTGGGCCCAAACGGGCTGTTAAAAGTTTACAGGCAAATATCCAGCAGAAGTCATCCTCCAATGCTAACTGGTGTCCCTGGACTGTTCGCACTCTGAACCTGTGGCAATAGCCTTCCATCTGGCTCCCTGATTCAGAAAACCACTTTAAATTGCACCTATTGCACTATCCATATAGTCCATACACTCATCCATATAGTCTTTTCATTCTGTCAACTTTGCTAGTAGTAGCCCTAGTAATGAAAACTCACCTGAATGATGTTGCGAAAACAAAATAGCAAATCTATTGACATTGTTAGCTATGGAATCTTAAGAACTCTAACCAAGCAAGAGATAAGATATGGGATAAAAAAGAAAACCAAACAAAAatcttacatttaaaaaaatgcaagCATGGACCAGTTAAAACTTCAACCACTGATAAGTGTCTTTTATTTTACTATTTGCATAAAGCGCCAACCCTAAATGGAAATTCATCTTCTCAAGCGTTTCAAAATTGAAACGGAACAGAACTGCAACAAAGTATGAAGTCTCTAACAAAAGGTAGATGACTTGCCGACGAAACATGTTTTTACAGCAGTATGaaccctccccctccccatctgaTGGAGACACCTGGATGGAAGCTGGGAGGAAAAGTCAGACCAACAACATCTAGAGATCTGGTCCAtaaattaaacaaattaaaaaaatattatttactcTTAATAATCACTACTGTTTCTCAAAATATTGGCCAAATAGGAATGCCTTTCCAAAAAGAAACTGCACTGACATTGTGTGTGGAGGACCAACTTGTGACTTAAGTTAGCTGGAAAGCAGTAGTAGCAATTGTAGTAATCAATAAACTAAAACAATTCTTAATATACACAGATCAATTTACTTCATCTCTCCCACCcttgctctgtctgtgtgtgagcatCCTCTTGCTTGTATTACACACACTTTTTACATTCAACAGTGCAAGGTGTCTTCCAGTCTgggggaggtgtgtgtttttCCACACACCTCAAAATACCATGTAGAGTAGAGCTTCCCAACACACCTCAGCACCACCTGGCCCTGCTCTGATTCAATTCTATGCAGTTACCCACAACCCCCCTGCAGACTGGTGGGTCCCCAGCCCCCACTCCTACCCTGTAGGCAGAGGTGAAGGGGGGACGATGACACCAGCTTTTTCCTGTTCTCCAAAACCTCAGCTTTCCTTCCTTTAAATCACACCAGCACACAAGCCACCAAATCAAAACAGACCTCTACCCCCCCGCTCCTTTAAGAGGAGTGACCCAGAGGCCTGAGCCACATCGGGTGACAAATGAGACCTGTCAACCACCCAGGCAGGTCATGACAGCCTTggagcagatgtgtgtgtgtgtgtATGTGTACTCTGCTGTGCGTGGGCTgcaggtctctctctcgctcaactTCTCTCTCAAACCAGGTTGTACTCTTTGAGGTTGAGCTGCAGGATGGTGTCTTTGACAGCCGCGAACACAAAGCGGATGTTCTCGGTGTCCGTGGCGCAGGTGAAGTGGGAGTAGATGATCTTGTCGCTGTCCGGGTTCAAGTCCACAAACATCTTCAGGATAAACTCCCGGCCCGCCTGGGCGTCTCTCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483856 lncRNA upstream 32983 64662168 ~ 64668926 (+) True G427120
TU483752 lncRNA upstream 191692 64509891 ~ 64510217 (+) True G427031
TU483745 lncRNA upstream 195488 64506217 ~ 64506421 (+) True G427024
TU483202 lncRNA upstream 207784 64447738 ~ 64494125 (+) True G426562
TU483204 lncRNA upstream 234913 64418219 ~ 64466996 (+) True G426564
TU483895 lncRNA downstream 2354 64708978 ~ 64709770 (+) True G427157
TU483859 lncRNA downstream 5054 64711678 ~ 64722880 (+) True G427123
TU484263 lncRNA downstream 220288 64926912 ~ 64927789 (+) True G427490
TU484264 lncRNA downstream 221810 64928434 ~ 64929092 (+) True G427491
TU484265 lncRNA downstream 222487 64929111 ~ 64929324 (+) True G427492
XM_036978074.1 mRNA upstream 133505 64520297 ~ 64568404 (+) False tle2a
XM_036978076.1 mRNA upstream 133505 64520297 ~ 64568404 (+) False tle2a
XM_036978075.1 mRNA upstream 133505 64520298 ~ 64568404 (+) True tle2a
XM_021603865.2 mRNA upstream 207768 64460937 ~ 64494141 (+) False LOC110524325
XM_036978081.1 mRNA downstream 104617 64811241 ~ 64842855 (+) False LOC110524331
XM_036978082.1 mRNA downstream 104618 64811242 ~ 64842855 (+) False LOC110524331
XM_036978083.1 mRNA downstream 123815 64830439 ~ 64842855 (+) False LOC110524331
XM_036978084.1 mRNA downstream 123816 64830440 ~ 64842855 (+) True LOC110524331
XM_021603892.2 mRNA downstream 293042 64999666 ~ 65009427 (+) False LOC110524337
TU483060 other upstream 457380 64243602 ~ 64244529 (+) True LOC110522985
TU483050 other upstream 522523 64177028 ~ 64179386 (+) False sac3d1
TU483051 other upstream 522523 64177028 ~ 64179386 (+) False sac3d1
TU483052 other upstream 522523 64177028 ~ 64179386 (+) True sac3d1
TU482675 other upstream 1017670 63676414 ~ 63684239 (+) True nfil3-4
TU484247 other downstream 285477 64992101 ~ 64997138 (+) True G427476
TU484227 other downstream 318091 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 318091 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 318091 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other downstream 318091 65024715 ~ 65028702 (+) True LOC110524338

Expression Profile