RNA id: TU528464


Basic Information

Item Value
RNA id TU528464
length 801
lncRNA type read_through
GC content 0.43
exon number 3
gene id zfr
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2342330 ~ 2451362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagtgttttagtaTCACGGACGTGCTTTCAGATTTTGTTATTTGTATTATGGCTTTTAACATTTTGGTTTAACAGATTATAATGGGACATTTGTTGGCTTGCCCCACATCTTGGTTTAACGCTGCGTACATATAGTTCATTTGAATAATGTATAGAAGATGAAAAACCGATTTGGATTAAAAAAAGACGAGCGTAACGTTGTTGTTTAAACGTAGATCCATTTAATGTTTGACTGTCagcctgtctctgcctgcctctctcggtctgcctgcctctccctctctgtctgccactctctgcctctccttctcgctgcctctctcttggtctctctgcctctccctctctctgcctctctctcggtctgtctgcctctctctcaattcaaggtgttttattggcatgggaaacatatgtttacattgccaaagcaagtgaaattgaTAAACAAAAGTTCTCTCTTTGTCTGGCtggctctctcctcccttctctgtctggctctctctctcccttcttggtcggtctctctctctgtctggctgtctcctccctttcatctacaatgattgaagtggatttaacaagtgacatcaataagggatcatagctttcacctggattcacttggtcagtctgtcacggaaagagccggtgttcctaatgttttgtccacacAATAGATAAgcttgcctggtcccagatctgtttgtgttgtcaccTTTTTGAGTTGGTAAGACAGCATAGATCTGGGAACCAGGCTATAAATGAGCTGATGACTCTAATGGTTCAGTTTGGAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU528446 lncRNA upstream 19649 2322438 ~ 2322681 (+) True G465318
TU528444 lncRNA upstream 24601 2317355 ~ 2317729 (+) True G465316
TU528443 lncRNA upstream 25011 2316947 ~ 2317319 (+) True G465315
TU528442 lncRNA upstream 40067 2301980 ~ 2302263 (+) True G465314
TU528439 lncRNA upstream 42400 2297098 ~ 2299930 (+) True G465311
TU528528 lncRNA downstream 24606 2475968 ~ 2480509 (+) False G465378
TU528529 lncRNA downstream 24606 2475968 ~ 2479994 (+) True G465378
TU528545 lncRNA downstream 67448 2518810 ~ 2520811 (+) True G465394
TU528614 lncRNA downstream 195899 2647261 ~ 2648218 (+) False G465451
TU528616 lncRNA downstream 195899 2647261 ~ 2649273 (+) True G465451
XM_036979198.1 mRNA upstream 142436 2149240 ~ 2199894 (+) False LOC110525063
XM_036979197.1 mRNA upstream 142436 2149832 ~ 2199894 (+) False LOC110525063
XM_036979199.1 mRNA upstream 142436 2162549 ~ 2199894 (+) True LOC110525063
XM_036979195.1 mRNA upstream 237189 2002088 ~ 2105141 (+) False LOC110525062
XM_036979211.1 mRNA downstream 15112 2466474 ~ 2489239 (+) True LOC110525158
XM_036979212.1 mRNA downstream 101849 2553211 ~ 2714300 (+) False pdzd2
XM_036979213.1 mRNA downstream 101849 2553211 ~ 2714300 (+) False pdzd2
XM_036979214.1 mRNA downstream 130419 2581781 ~ 2714300 (+) True pdzd2
XR_005051983.1 mRNA downstream 272403 2723765 ~ 2724931 (+) False LOC110516346
TU528322 other upstream 278263 2062328 ~ 2064067 (+) True G465203
TU527663 other upstream 1113231 1228705 ~ 1229099 (+) True G464705
TU526870 other upstream 1883324 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 2074179 265409 ~ 268151 (+) False G463813
TU528673 other downstream 354021 2805383 ~ 2834110 (+) True LOC110525071
TU528784 other downstream 527480 2978842 ~ 2982425 (+) True G465578
TU530344 other downstream 1321502 3772864 ~ 3773340 (+) True G466813
TU532741 other downstream 3657017 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 3704085 6155447 ~ 6156681 (+) False G468732

Expression Profile