RNA id: TU585102


Basic Information

Item Value
RNA id TU585102
length 3665
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC110526072
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48948617 ~ 49037542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatagatataaaagGAAAATTTAACACTAATATAtctgttagaatcacctttggaagcgattacagctgtgagcctttctgggtaagcctaagagctttctacacctagATTGTGGAACATTTGCCATTCTTTACAAAAGtagtcaagctctgtcaaattgtttattgatcattgctagacaaccattttcaggtcttgccatagatttaagtagattttaagtcaaaactgtaactcagccactcaggaactttCACAATCTTCTtgctaagcaactccagtgtatattttgccttgtgtttttggttattgtcctgctgaaaggtgaattcatcgtCCAGTGTttgatggaaagcagactgaaccaggttgtcctctgaaattttgcctgtgcttagcgcaaactccccagtccttaacgattacaagcatacccataacatgatgcagccacaactacagaattgaagtcagaagtttacatacacctaagtttttcttttcacaattcctgacatttaatcctagtaaaaattccctgtctcagatcagttatgatcaccactttattttaagaatgtgaaatgtcaataatagtagagagaattatttatttcagcttttatttctttcatcacattcccagtgggtcagaagtttacatacactcaaatagtatttggcagcattgcctttaaattgtttaacttgggtcaaacattttgggtagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtcggcctccttgctcgcacattcatttttcagttctgcccacacatttttgataggattgaggtcagggctttgtgatagccactccaataccttaactttgttgtccttaagccattttgccacaactttggaagtatgcttgggggcattgtccatttggaagacccatttgccaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacacaatttcccTTCcatatgatgccatctattttgtgaagtgcaccaggccctcctgcagcaacgcacctccacagcacgatgctgccacccccgtgcttcacggttgggatggtgttcttcagcttgcaagcctccccctttttcatccaaacataacgatggtcatcatggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtacattctttgtccccatgtgcagttgcgaaCCGTAGTCTGGCTCTTTTTTtctggaggttttggagcagtggcttcttccttgctgagcagcctttcaggttatgttgatataggactcgttttactgtggctatagatacatttgtacccgtttcctccattGACgccattgtgaaatccctgaatggtttccttcctctctagcaactaagttaggaaggactctgtcaccatgctcaaagggatattcaatttcttattttttttgctTGCTCGACTGAggtaccttacagataattgtatgtgttgtgtacacagatgaggtagtcattcaaaaaatcatgttaaacgctATTATTGTCTAATAAAATGCATTTGCTGGCACACACCCAGAGAAAATTATTTTaatgtagaggtgctgactaatggtGAATAAACTGTAAGCtatataaaaaaaagtgtttttaaacgctattattgcacacagagtccatgcaacttatgtgacttgttaagcaaacttTTACTCATGAATTTATTTAGGAGTTGAACACTTGACtcgacatttttttaaaaacttaattacaaatttgacattatgggctattatGTGTAGGCTAGTAACGAAAAGTatctcaatttaatctattttaaattcaggctataacgcaacagaatgtggaaagagtcaaggggtgtgaatactttctgaaggtactgtataaaGGAGAAATAGTATATTACCCTGTACGTTTATGTATTATAGTATCTTATATAATAGTAATTGTTTTAGGGAGGCTCATATACTACATACAAGTAACAAACAGCAATAACATGGAAAAGCAATTTGTCATGAATAATTAAGCTCATGACATCCACAGCACATATCTGACTTTTAGAGACCCCTAAGGAGAAACATTTATCCTCAAggagaaaaaacaaacatgttaaCCAAACAAATGGGTCATATGAAAAAGAGAGACTGAAGTTATAGAATAACTGGTTTGTTACTTATGCTGCAAATGTATAAAGACGCTTTGCTTAATAAGAGTGCATTTTGGTGTATTCACTATGTACAATCTAACACATGGAGCATTTTAATTAGCCTATAGTTATTTGACATGTGCGTGCCAATTTTGAATACTGATTAGTTCCCAATGTGTTTGTTCTAGAGATTTACTGTTTCTTTCCGTGGCTGCAGCTCAATCCCCTCTTTCCACTGATATAAAGCTTGGCCTATTTCATAATATAGTGTTTGTGAAAGTGGTGTTTTTCTACACATGAGAGGATCCAGACAAGAAAATTGTCACAAAATCATATTTAAAACTCAAGCCTTTTGAGCTGGCAACTCATACGACCCCATCAAAGATTAGACTCAAACATGACAATGTCGTCTGAACTTTGACACCCACGTCCTAATTACAAAGATGTCTTCTCACAGAAGTCTGAAccgtttgagctacaaactaatagTCACCAACATCAACAGATAAGACTCTCATAAACATTTAGCACTCGTTTTACTGTACATCGCACACAAGCTTCAGGGGCGTCATCGGAAGGTAACCTGTGAAAATGGCACAACATGAATAGGGTATGAAAAGTGCCATAAACAGAGTGACTAAATATGGGTATAGAtgtgtatataaataaataaaaattgcttATATCTCCTACATATAGACCCAGTCGGTATTAGATGGACCGTCGTGGCCCAGCCTGCCTGTGGGGGAAACAAACTGTGGTAACCTAGGTTACTCTATTGGCTCACAGCAAAaacttgacctttttcaaaacacagttttgttgttgtctgcttgttttagtcaattacaaaactacatttaagaaaagtacaaCATGTATAAAGATAACTTTTCAGCATTGCCTGCTCCATAGCATTCTCACTACTTAGAAAGATGTAATATTGTAGGGcttccctcatgccccttttCATGACGAAGCTTGCAGCCATTcgagcgagcgtgtgtgtgtgctaggtagctaccgaccggaacattaagctagccaagaccaacaacacaaacaaactgaCTATACAGATACAAGTTGTGGGTGGAGTTACAAACTGACTGTACTAAACACTCCTACGctgaatagcctgaagccacagggctcttctcgcaGGCTCCATTTTCCTATGTAGGAGCATTGCAAAATCAACGACAGAGTTGGCTCTTGTACAATGGAAATATTAGTTTTTCCCAATTTGTGAGCGTGGTCGAGGGGAATTCCTTATTATTACGTGACTATTGACTCGAACTATAGGACAGACATTTCAAAAACGTATtccttttgatttatttttgggctgttttgccatttatgaatctgttatcaatgtgtttctatgggctataacAGTAAAAGACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585116 lncRNA upstream 75431 48957890 ~ 48958392 (+) True G515839
TU585113 lncRNA upstream 78402 48955109 ~ 48955421 (+) True G515836
TU585098 lncRNA upstream 92040 48940586 ~ 48941783 (+) True G515821
TU584691 lncRNA upstream 132989 48899401 ~ 48900834 (+) True G515442
TU584710 lncRNA upstream 134522 48899096 ~ 48899301 (+) True G515460
TU585221 lncRNA downstream 70804 49108346 ~ 49108615 (+) True G515932
TU585177 lncRNA downstream 124252 49161794 ~ 49162460 (+) True G515897
TU585285 lncRNA downstream 191627 49229169 ~ 49230070 (+) True G515985
TU585286 lncRNA downstream 194969 49232511 ~ 49232995 (+) True G515986
TU585186 lncRNA downstream 196037 49233579 ~ 49260632 (+) False LOC110526066
XM_036980322.1 mRNA upstream 505065 48419773 ~ 48528758 (+) False cntrl
XM_036980324.1 mRNA upstream 505065 48419773 ~ 48528758 (+) False cntrl
XM_036980323.1 mRNA upstream 505065 48419825 ~ 48528758 (+) True cntrl
XM_036980311.1 mRNA upstream 640816 48387256 ~ 48393007 (+) False LOC110526080
XM_021606672.2 mRNA downstream 24908 49062450 ~ 49063259 (+) True cmlc1
XM_021606671.2 mRNA downstream 39115 49076657 ~ 49134305 (+) True qsox2
XM_021606668.2 mRNA downstream 108585 49146127 ~ 49156002 (+) True LOC110526069
XM_021604927.2 mRNA downstream 145749 49183291 ~ 49187334 (+) False edf1
XM_021604928.2 mRNA downstream 146319 49183861 ~ 49187334 (+) False edf1
TU585107 other upstream 79532 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 445935 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 1081569 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1517113 47513786 ~ 47516710 (+) True LOC118964881
TU583807 other upstream 1713773 47306438 ~ 47320050 (+) True G514665
TU585255 other downstream 146331 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 196037 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 267583 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 348972 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 711646 49749188 ~ 49751749 (+) True barhl1a

Expression Profile