RNA id: XM_021606671.2


Basic Information

Item Value
RNA id XM_021606671.2
length 2925
RNA type mRNA
GC content 0.49
exon number 12
gene id qsox2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49076657 ~ 49134305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAGATGACAGGCTGTGGTATATCTTGGTTTAGTTTAACAAATCTTTGACTGAACCGAATCCGTTTGTCTCCACTCGATATACGTCATCAATTTTGGCACCAGGCGTGTCCGTCCTTAGCCTCTCGCTTTCCATCTCCACATTGTCTATACGATATGGCGACTCTGTGTGTTGACGGCTGCCCTTCGCTCcgaaaaacagtttttttattgTTCAAAACGAGCATTATTTTTGTGTTTCTATTTAATCCGTCTCTAACCACTCGGCTGTATTCTGAGGAGGACCCCGTGGTTATACTGACAAGCGCGACTGTCAAGCAGACTTTGGTCAACTCTTCCACAGCTTGGCTGGTCCAGTTCTACTCATCATGGTGTGGTCACTGCATCCAGTACTCTCCTACCTGGAAGGCACTAGCTGGCGATGTAAAAGattGGGAGCATGCCATACGGATTGGAGTCCTGGACTGTGCTCAAGAGAATAACTTTGACATCTGCAAGGAGTTTGGCATTCACTTCTACCCCACCTTCAGATACTTTAAAGCACGTGGCCCCACATTTGATGTTGGAAAAACATACAGAGGTGCAGATAGGGAGCTACAGACAGTGCGACAGGTGATGGTCAACTTCCTCCAGAACCACACAAGAGAGGACTGGCCTGTCAGCTGCCCTCCACTTGAGCCTTACAGCTCTGCAGATATATTGCCTTTGATTGGTCAGAAATCCAACCAATACACAGCTGTCATTGTTGAGAACGAGGACTCCTATGTTGGCAGAGAGGTTATCTTGGACCTGATGATGTATCAGGGGCTAACAGTGAAGAGGGCATTGAGTTCAGAAAGGAGCCTCACAGAGAAGCTTGGCATCAACTCTTTCCCCTCAGCATACCTTCTCCACCCTAATGGAACACATGCCATTCTGCATGTGCAGAAAAGACTGCGCTTCTTCTTCTCCTCGTTCCTCAAGCTTCTCCTAGGGGTCCACAGAAAGCTAAGCACCTCTGGAGCACCCCAGGAGCCCCTACTGGAGGGGCCACGAGGTCCCGGGACAGCTGAGGCCTTGAAGGACTTTGAGAAGTCCAAGGTGTACATGGCGGACCTTGAGTCAGGGTTGCACTACCTGCTGAGAGTAGAGCTGGCTACCCACCAAACCCTGGAGGGAGAAGAGCTCAAGACCTTCAAAGACTTTGTGACAGTGGTTGCTAAGCTCTTCCCCGGTCGCCAGTCTGTGGTAAAACTCTTAGAGACTCTTCTGGAATGGCTGGTCAGTCTTCCCCTGGAGAAAATCCCCTTTGATGCCATCCTCGACTTGGTCAACAACAAGATGCGGATTTCAGGGATGTTCCTGAGTGACCAGCTGCAATGGGTGGGTTGCCAGGGAAGCAGAGTCGGACTGAGGGGCTACCCCTGTTCACTGTGGACCCTGTTCCATGTGCTGACTGTCCAGGCGGCCAGCCGGCCCGACGCATTGGCCAACACCGGCCTGGAGGAGAATCCCAAGGCAGTGCTGCAGACAATGCGCAAGTACATTGTGAACTTCTTCGGCTGCCAGGAGTGTGGGAAGCACTTTGAGGAGATGGCCGTGGCGTCTCTGCCCCAGGTGAAGTCTGTGGACCAGGCGGTACTGTGGCTCTGGAGGAAACACAACCAGGTCAATGGACGCCTCGCAGGAACAATGAGTGAAGACCCTCACTTCCCCAAGACCCAGTGGCCCAGCCCGGACCTCTGCCCCATCTGCCACGAGGAGCAGGATGGCATCCACGTGTGGAACGAAGACAAGGTGCTGATGTTCCTCAAGCAGCACTACGGGGCCGCCAACATCTCCCCCAAACACATGTACAGCAGTCGGCATGAGTCAAACCAGGAGGCCGTCGGATCTCCTGACAGCCTGCCCATTAAAGCCACACAGGTAAAGACAGTGGCCCCTGAGAGCTCCCTACTCCATGCCAACCATGCCAAGCAGAGTGACGTGGAGGGAGCAGGGCAGGCGGGCACAGGCGCCCACAGGGAGACCAGGCCGGGGGTGAGCTTCCTGGGTCTGGGCTTCTCCAGTGTGGACATGAGTCTGTGCGTTGTGCTCTACGCTTTCTCCTGTGTCTTTCTCATGGTCATGTTCTTCTTTTTCCGAGTCCGCTCCAAAAGGTGGAAGATCCGCTACAATCGTCCATATGTGTAGCAGTCTACTGGTCCAGGTCTGCACATTTGACTGAGCAAAGAGGTTCTTTTTGGAATtgagttttattttttaaatgcagaTTAGAAGGtcgcattttttatttatttgtttatgttCTGTATAATATTTGCTGTGAAGCAACAGTCTTCAGATGATGAAGTATTTTACAATTGCGACTGGTTAAAACCGTTTTAGTCCCATAGCAGAACCCCATAACATTGTCATGGGGGAAGGACTTGACTGTACACAATTCATTCCCAATACAATGTCTCTTAGCTATGATGGTAAGGAATTGTTTTTAGTATAAAACCATGGCAGAGTCCAATTAATCAAGTGTTTTTTCTATCTTTCTATCTAATTCAACGGTATTGGTCATGTTTTAATGGACTAAGGTGAACCTCTGGAATATTTGTATTGACTACTACTAAAATATTACTGTGTGAATTTATGATTTCAACCTCAATGTATTATTTTCCAGACGTATCAAGGTGATCACTTATTACAACCTATTAATGTCGGTCCATAACcatgagaaagagaggagcaaGTACAGCCTTATTTTACCCAAGTGCTTGTTGTCCAAATACTTGGTGTGCATTTGAAGACCTCTGTATTCTCCCAGACCCTAGGTGGCCTTAACGTGATTTCGTCATTCATTCTAGTCCAGTATGTAGTatgtggtataatacactattatacactaccgttaaaatgtttggggtcacttagaaatgtccttgtttttgaaagaaa

Function

GO: NA

KEGG:

id description
K10758 QSOX; thiol oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585102 lncRNA upstream 39115 49033823 ~ 49037542 (+) True LOC110526072
TU585116 lncRNA upstream 118265 48957890 ~ 48958392 (+) True G515839
TU585113 lncRNA upstream 121236 48955109 ~ 48955421 (+) True G515836
TU585098 lncRNA upstream 134874 48940586 ~ 48941783 (+) True G515821
TU584691 lncRNA upstream 175823 48899401 ~ 48900834 (+) True G515442
TU585177 lncRNA downstream 27489 49161794 ~ 49162460 (+) True G515897
TU585285 lncRNA downstream 94864 49229169 ~ 49230070 (+) True G515985
TU585286 lncRNA downstream 98206 49232511 ~ 49232995 (+) True G515986
TU585186 lncRNA downstream 99274 49233579 ~ 49260632 (+) False LOC110526066
TU585187 lncRNA downstream 107905 49242210 ~ 49246453 (+) True LOC110526066
XM_021606672.2 mRNA upstream 13398 49062450 ~ 49063259 (+) True cmlc1
XM_021606673.2 mRNA upstream 42567 48948992 ~ 49034090 (+) False LOC110526072
XM_021606674.2 mRNA upstream 42567 48963559 ~ 49034090 (+) False LOC110526072
XM_036980322.1 mRNA upstream 547899 48419773 ~ 48528758 (+) False cntrl
XM_021606668.2 mRNA downstream 11822 49146127 ~ 49156002 (+) True LOC110526069
XM_021604927.2 mRNA downstream 48986 49183291 ~ 49187334 (+) False edf1
XM_021604928.2 mRNA downstream 49556 49183861 ~ 49187334 (+) False edf1
NM_001124502.1 mRNA downstream 49884 49184189 ~ 49186710 (+) False edf1
XM_036980343.1 mRNA downstream 53870 49188175 ~ 49189807 (+) True LOC118964897
TU585107 other upstream 122366 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 488769 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 1124403 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1559947 47513786 ~ 47516710 (+) True LOC118964881
TU583807 other upstream 1756607 47306438 ~ 47320050 (+) True G514665
TU585255 other downstream 49568 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 99274 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 170820 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 252209 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 614883 49749188 ~ 49751749 (+) True barhl1a

Expression Profile