RNA id: XM_036980394.1


Basic Information

Item Value
RNA id XM_036980394.1
length 2421
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118964907
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50719208 ~ 50743120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGCTGTGCTCCATGTTTGGAATGTTTATTGTTGGCATCAGTCTTATAGTCACCCGTGACTATTATTTCCTATGCACACTTTTGGCTCTGCTAGATCACAAGGTAGTTCAATGAAGAATCATCATATTTCTTGTCCTATAGGTTCATTTTGCAAAGCACATCTATGGTCTTATTGGTCCAAATATAGGCCTGGGGTTTGCTATTGGTGGGTGCCGATGTGTTATGTAGAAACACATATGAATGATGGTCTGAAGcatcagaaagacagacagacagatataaaTATAGCCACGGCCCAGCCCAAGTGttgacccaagatcagcgtccAGGGGCAACTTAATCCTACTTTGTAGTGGATATTGTCTGCTATAGAATTACAGTGGTCTCAGGATGACTGCAAGCCAGGGGTTGAGACACATACGCCTTATGGGAGTTGCCTGCAAGACCCATGTATTGTGCTGAAAAATAAACCAAAATGGTGGCCTCTGTGGGTCTGAGTGGATACTGCACCCCCGGCTGGCTATAGGAGTGAGTGGCTTATGTCATCTTCAACAAACGGAAGTTCTTCGACTTTGCAACACTGCTCAATATGGACCTTATTTATACGTTATTATAACCATGTAACCCAGGGAAAACAGAGAACATCAAAGTGACTTCTGTTTCCTTTATCTCACCCGCCATAACATGCCCACACTAACCTAGAGGACTTTTCAGATGGGTGGCGGTGCGGGCTACAACACACAGTTCATGCAACACCCGGGCCCCAGAGGTCCCCCTGGCACGTCCCTGGCAGGGATGGGTCCTGCTCGTTTTCCGTCAATGGGGCCCCTCAGGGCCAGAGGATGCCCCAACACCCAGGCTACCCCAGGGCTCAGCAGGGACACACTAGGCCGCAGCAGGGACTCAAATGCCCATACAACGCTGAAGTGAGTCTCCCTCAGCGAATGACTTCACATATTTTCTAATGCAAACCATTTGTAGACTGACAGCCATAAGTTGAAAATATACAGTGTGAATTATAATACTATGTTAACACCTacgtacattttatttattttattaagcTTGAGCTTTATATTGAGTTTAACCTAATGTCGTTTTTTGTTCGTGTCCAACTTCACCAACATATCTGTCGAACCCctattcctgtctgtctgttgcacAGCCTGCTGGGCTGTACTGTTTTCACACCCTCCctcctatgtgtgtgtatgccctGGCTGGCTACTGTAATAATACCCAAACTAGAGTCCAGAGTACAAACCAGTGTTGTGCAGTTTGCCTTTCCATCGGAGCAGTTCAATGGACAATGAACTAGCGGCTGGGGGAGTCAGTGGAGTTTACAACATCTTCAACCAGGCTGCagtcaatgggagacagaCTGGGCAGGGTGATGCCTGGTTATCCAAGCTCTCCCCTTCTTGGAAACcccacccctcccataaccccAGGCAGTGTGATGCCCCCTACATGTCTCCTGGCCATGACGTCAAGCCCACTTACCTGCCTGACATCAAGCCAAACACGAACTCCCTACCCCCACCACTCCCCACAGCACTCACCGCTGACAGACTGCGTTCTTGATCAGGTAAAGGTGTCCTGTGACGGCGAGAAGATGTATCTGCCCTGCGACGTGTGTTCACATTATTCTGTACATACACCGTTCCACTGTGCGGGTCCACCTGTATTACGAAGAAAAGCATTGGCCTAATTCAATCTGAAAAAAGAGACACTTGAATGACACTTGAATCACTTGAATCCACACAGCTGCAAAACGTAGCCTAAGCATCACTGGTCAATCCACTGCAGGTGCTCTCACCTGTTCCAATGGATCCATCGCTTCTTTAGAGGATCCGATTAAATTGGAGTCGAGGCTGCGCACAAAACAATGAGAACACATGAAAAGCAAAGCGATCGTAGGTGTCCACATTGTTGACCAAACAAAATGACACATAATATCCAGCCGTTGTAAATAGCAAAATCTCTAATACAGAAGACGAACCCACTTTTCTCTGAGCAGAGCAGGTGTATCCTGGTACTTATAACCCTACACCGGCCCACCCGCACATTGTAAAGCTTCTACTTCTTTCATTGCACACCAAAACCCACACCAATCCCTCCTCCCAACACACAGAGGctctttgaaatgtatttttaataaatAAGAAATATTCTTTGAACAAACCGCATCAGTCGACATGGATGAGAGCTACATCCTGGCCGACCGGAACATATGGTAAGCTGCTCTCTTTAGAACTAGACTAGTTTAGGCTATAGGGGGAAATGTCGTAAAATGAAGAATTGTCAACCGTTTGATGGTCTGAGATCCCTATCTATCACtcctgtaataataataattaggatATTAACTGTCTAAAATAACGTAGTAGGCTATAATAAATGTGTTACCGCCACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586439 lncRNA upstream 19602 50689902 ~ 50699685 (+) True G516990
TU586449 lncRNA upstream 182880 50519839 ~ 50536407 (+) True G517000
TU586408 lncRNA upstream 212989 50473529 ~ 50506298 (+) True G516964
TU586372 lncRNA upstream 285290 50433732 ~ 50433997 (+) True G516933
TU586357 lncRNA upstream 334230 50384006 ~ 50385057 (+) True G516918
TU586530 lncRNA downstream 19210 50762330 ~ 50763117 (+) True G517068
TU586531 lncRNA downstream 20596 50763716 ~ 50764117 (+) True G517069
TU586572 lncRNA downstream 29404 50772524 ~ 50773077 (+) True G517101
TU586573 lncRNA downstream 30226 50773346 ~ 50773606 (+) True G517102
TU586579 lncRNA downstream 38829 50781949 ~ 50782422 (+) True G517108
XR_005052154.1 mRNA upstream 141 50711386 ~ 50719146 (+) True LOC110526117
XR_005052155.1 mRNA upstream 48490 50664006 ~ 50670797 (+) True LOC118964908
XM_036980389.1 mRNA upstream 89029 50541693 ~ 50630258 (+) False LOC110526111
XM_036980397.1 mRNA downstream 4161 50747281 ~ 50759879 (+) False LOC110526112
XM_021606743.2 mRNA downstream 4162 50747282 ~ 50759879 (+) False LOC110526112
XM_036980396.1 mRNA downstream 4162 50747282 ~ 50761069 (+) True LOC110526112
XM_036980398.1 mRNA downstream 41091 50784211 ~ 50791053 (+) False tti2
XM_021606749.2 mRNA downstream 41092 50784212 ~ 50791053 (+) False tti2
TU585910 other upstream 967538 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1332075 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1412147 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1472834 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 1531964 49183873 ~ 49187323 (+) True edf1
TU586543 other downstream 168708 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1535373 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1908820 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3182822 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3526805 54269925 ~ 54270259 (+) True G521914

Expression Profile