RNA id: XM_036980404.1


Basic Information

Item Value
RNA id XM_036980404.1
length 4297
RNA type mRNA
GC content 0.46
exon number 9
gene id znf608
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51113986 ~ 51128144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcAAGGGTCACTaccaagcaagcgacaccataaagaccaaggagctctccaaacagGTGGATTCAATGTTTACAGTGCCTGCACCCCCGCCACCCGGCCCTCAAAGCCCAATGTCCAATGCCCCCTTCTCTTCACCCATCTCAAAGCAACTTCTGGTGAGGACCAGATCCATAGGAACCAACACACAAGATGGAGGGCCAGACACCGATTCATGTCGCCCTGGCCCTTGTCAGCCAGGCACCAGTGTCAACCTGGAGGGCATTGTGTGGCATGAGACTGAGGAAGGGGTCCTTGTAGTCAATGTAACATGGAGAAAAAGAACCTATGTGGGGACTCTTTTGGACTGTACCAAGCATGACTGGGCACCACCCAGATTTTGTGAGTCACCATCCAGTGACCCTGATCTGCCAGGTGGCCGTGGCCGTGGTAAAAGGATGCGACTGGCCATCCCGGATCGACCCTGTGTTGAACCTGGGCTTGCCAAGGTCCGAGGGCTGCCACATAAGAGCCGTGGTGGGGGCATTCACAGCAAGGGCCGAAGAGGGAGCCTTAATCTGATCAATAACTGCAGAACACCTCCCTTTTTCACAGTTGAGGAGATCAAGCcaaactccatcccatctgggAAGAGGAAAAACAAACCACCGACTGATCTGGATTTGAGTTTAGTCACAGATGACATGAAAAATGGAAACGGGAAGAGGATCCGTGCCAAGTCCCGGAGTGCTCCTTCCACTCCACAGGGAAAGTCGGATCCTACCTTTAACGATTCGGCATGTACCTCTCCCATTCTGATAGACTGCCCCCATCCTCACTGTAACAAGAAATACAAGCATATCAATGGGCTGCGGTACCACCAGACACATGCACACTTAGATGTGGACCGGAAGCCAGAGTTTGAGGCTGAGATTGAGGACAGACTGTCTGACTGTGAGGAGTCCCTCAGTAACATGACTTTCGACTGCTCCGATATAACCAATAGCTCATCAAAGAAGCCCAGCCCCCTATATAAGGTTTCTACAATAGGGTCTCCAAAAAGCAGACGATTAATGTTCAATAGTGATCATAGTCCCATGGCGAATTCTAAAATGAGGAGGAATTCATTGATCAAAGAGGGACTCATTGATGACTTGAGTAACTTGCCAATCATCTCGAACATGACTGTGGTACTGGAAAATTGCCTTGTTACTGATAGGaactcctctgtggagatgcctAAGCTTGAAGCCGAGGGTTTGATCGATAAGAAGGGAGTGTGTGATAAAGTGAAAAAGGTTAATGGGAAAGTTGAGAAGTGTTCATCTAAATCTAGAACCAACAGGCCTATAGCTCCTGCTCCCCCAAAGCTGATTGCAATCCCCAACACTGTGTTCTCCACTAACACAACAGAAGCCAACCCACAGCAGTCTTCCCCATCAGTAGCTGTTGGTGTCACCACAACAAAGAACCTCTCACTTAAACCCATAAAGCCAAAGTTAAACATCATGGTAGAGCCAAGTCTGGGTAAAACAACCCTAGTCACTTGCAAGGAGACCAGGAACAAAGACAAACGAAGATTAAAAGACAAACACAATAAAGACACAAGGACCTCTAATGGCGATAGCATTCAACTAAAGATGGACGAGGGAAAGGTGGTGGGAAAAGAACCTTCTGGAAGCCTTCTGAAAGAGCACTTGAGCAAACAAGACGTCATGAACAGTCTAACGGAGTCTCAGGAGAGTAGAATGGCCAGCATCAGAGCTGAGGCTGACAAAGTGTACACGTTCACTGACAACTCTCCTAGTCCTTCCATAGGTAGCTCTTCAAGACTGGACTGTGGCTCCCTTGAAAGTGGAGATGGCACCACCACCAAAACTAACAGCCCGGCATACTCAGACATATCAGATGCAGGTGATGATGGGGGTTCAGACTGCCGTTCAGACACTAGGTCCAAAAGTCCAAGGTCCATCTCAGCCTCTGAGATGAACTCAAACAACAATCCCAATCTAAATCCAAAGACTCCTCCAGCTGCATCTATTCCTGCAGGGCCTGTCAAAGACCCCCAGTCTCCTTTTTACCACGGATATGACCCCTACTATATTCAGAATTACATGCAGACCGGCCAGTCAAACACAGCTGCTTTCCATAAGACCTCCACCCTTCAAGACAGTAAATGCAAAAAGGAGGACAATGAGGGGAGAAACACCCCGGAATTATTTGATTCGAAGAAGACTGATGTCATCAACTCAAGTTCGCAGTCCCAGCTTCAGATGGcgatgacacaaacacacacggctCTTGCCCAGTCCTTGTACTACGGCCAGTATGCACGAGGTCTTTACATGGATCAAAAACTCTTAATTGCATCCAAGTGCTGTGATCAGCAGCAAATCACCAAGCAGAGAGGAGGTCAAGCAAACCGAGAAACAGATGAGTTGAAACACATGATAACCTCGACATCTGTATTATCTAAGGGGACAGACTCTGTGAAAACGTGCTGTGCCAAACCTGGGCTCTCGTTTGCAGAAATGGATGAGCGGCCCCAGACTCTGACCACACAGCCACAAGGGAAGCCGATGCTTGTCAATATGACAGAAAACCAGGGACTTGTCAAAGACAGTGATGAAATGAAATCATCCATGAATCCAAATAATCAGACAGATCTGGACTCAAATGTATCATTTTCAAATCATGCAGAAGTCCAATGCTGGTCCCGCCCAAATCAATCCAATAATGTGGAGCAGCAAAGTGAAGAGCTTAGCCAGAGCTCAGAGGAGTTAAATGCTGACATGTCTAAGGAGTGGGAGATGCCCTCTGAGCCAGTGACAAAGTTGGGAGTAGAGCTCAAAAAGGCCACGAACCAGAACGTCACTACATCAGACATAGAGGACTGTGATAGGCTAGAGGAGCAGCAGCCAATAGGGGTAATGTCTGAGGAATCACAGAGTGCCAGGGTGGCTGTATCACCAGCGATGAACCCCCAACAACAACCCTATATCCAGTACCAGCATTCCTACCAATACCTACAGATGTGTGACCCCAGCAACAACTCTTACACGGTCAAGTCACCCACCCTGGTGCATAACTACCCACGTTTCCACTATCCTCTCTATGGGAAAACAGCAGGCAGAGAGGAGTCAGATTTGACTCAGAACAGCCGTAGTGTGAGCAGTAAGCCAGCCAGTGAGTCTACTGCCCTTGAGCTTCTGCAACACCACAATCTGCCATACCATGGCAAATCCCCTGCGCCTGGTGAGAAAGGATCccttgaaggagagagagagactgaccggGAGAGGAACCATGTTCCCTTTGCCAGGCACCTTCACACTCATCATCATACACATCTTGGAATGAGCTACCCACTCATGTCTGGGCAGTACGACATTTTCCAAGGGATAAGCTCTAGAGCCCTGGTTTCCAGCCAGAAGGTGTTGGTACACTCATCTTCAACTGATAATGAAGGGAAGAAGTAAAACCATGTGACTGGCTCACATGAGGATAAGAAGATTTACAGGCATCAATTCCATGGTGTTATATTCATAGCCTCTATGGGAGGCAGAGAccaatttcatttgcgatttaaTCAATATTTTATAAGAGTCAGAGTAGTGGTATTGTAATATTGGTGGAGATATGTATCAAGTAACAAGACTTAAGTATTTTGCATTTGGATGCCTGTCTGAAAACACACGTGACAAACCCCATAGTGTCATAGAATCAGCCATAAATTGCCATGCTACAAAGTTTATATGCACATGTATCGTAATGTAAATCATATGGTTGAATGTACTGAAATTTGTATTATCCCAATGTTTTTTTCCGTTGGGAAACTGCAATTGAAGTGCAAGAGTCTATAAAGTGGTCCTCCCAGTATTACTTAATTACATTTGTATACTGTACTTGACTGTAGCCACTTGTTGATTGTATTGTCTTGTGTGAGAGTAAATCTTCACATTTTACCAGTGCCATAGAACTGTGGTGTATATATTCTGTATAGTTACATGACATAGTATTAAATGCTTATTATTTatgtttgttttcatttcaatgcATTGTATTGTGATTTACATTACAGCACATTACTTGCATAGTCACAGTGGTTGTTTTATTACTTGAATAGTGCTACAAACTCTGTTTACAAGTATGGACATCTCTAGAGAAACTCTTCAATGAAGTTGCATGATCAGTGTAATTCACACAGTGTATCAAGTTACTTTGGAATCAATTAAACATGGAAACTGCTGTTGCTTTTTTATACTGTTTATGCCTTAATTCATATGTGTGGCAATCAGAATTAAAGGGTGTTTATATACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU587572 lncRNA upstream 6791 51109782 ~ 51110093 (+) True G517998
TU587552 lncRNA upstream 22702 51093943 ~ 51094182 (+) True G517978
TU587535 lncRNA upstream 34805 51081713 ~ 51082079 (+) True G517961
TU586539 lncRNA upstream 132689 50980226 ~ 50984195 (+) False G517073
TU587589 lncRNA downstream 5515 51133659 ~ 51133895 (+) True G518012
TU587613 lncRNA downstream 20013 51148157 ~ 51148377 (+) True G518036
TU587716 lncRNA downstream 101852 51229996 ~ 51230526 (+) True G518132
TU587717 lncRNA downstream 103381 51231525 ~ 51231822 (+) True G518133
TU587768 lncRNA downstream 166044 51294188 ~ 51294400 (+) True G518182
XM_021606766.2 mRNA upstream 99756 50991573 ~ 51017128 (+) True LOC110526132
XR_005052159.1 mRNA upstream 194778 50911697 ~ 50922106 (+) False LOC110526128
XM_021606758.2 mRNA upstream 215790 50899096 ~ 50901094 (+) False LOC110526127
XM_036980400.1 mRNA upstream 270285 50817728 ~ 50846599 (+) True LOC110526125
XM_021606750.2 mRNA upstream 325831 50784988 ~ 50791053 (+) True tti2
XM_021606776.2 mRNA downstream 31290 51159434 ~ 51225264 (+) False LOC110526137
XM_036980406.1 mRNA downstream 31292 51159436 ~ 51225264 (+) True LOC110526137
XR_005052160.1 mRNA downstream 584646 51712790 ~ 51718231 (+) False LOC118964909
XR_005052161.1 mRNA downstream 584646 51712790 ~ 51718231 (+) True LOC118964909
XM_021606787.2 mRNA downstream 755139 51883283 ~ 52006875 (+) False homer1b
TU586543 other upstream 194787 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 381648 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1365135 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1729672 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1809744 49305125 ~ 49307140 (+) True G516011
TU589106 other downstream 1150349 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1523796 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 2797798 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3141781 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 3751555 54879699 ~ 54940873 (+) False LOC110526161

Expression Profile