RNA id: XM_021604942.2


Basic Information

Item Value
RNA id XM_021604942.2
length 4394
RNA type mRNA
GC content 0.45
exon number 10
gene id nr1h3
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56332705 ~ 56357630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttgaatgcagcaTACATTGCGACCCCTCTTCAAAAAGGAGCGAGTTTATAAATTGTCGTTGTGACGTCGTGTGCTATCGATCAAAAGGTTTTGGACAAGGCCGGGCTGGTGCAGTTAAATAAGTGACATTCGTAATAATGTATTTTAGTTGTGTCTAGCTATGTGTCAACTCTGACAAATCTTTGCGTCGGGTGAAATTTATTTAGGCCTAGCTCTACCTATTTCCTGCTCAAGTCACATGATTGAATACACCAACCGTGCATCAGGACTTCGTGGGCTCTGTCTGGCTAGTCGCTACGAAACGGGGTAACTATCGGTTACAAACTCAGGTGCAGATTTGATTTCGTAATGACAAGCTGCTGTGCAGAAGATGTCCACACTGTCTGCGACTGATATCACAGATGTTGGTCATGGTGAGGTGTTTGACGGGGACCCAGAGCTGCAGCTGGACTGCCTCTGCAGTGGTGACGACCGCAGCAGTGCAGAAATGAAGCATGAGGGCAACCTCCTCCCCCTGGAACCACCTGACCATGCAGGGTTTTCCAGCTCCCCCCAGAAAAGGCCTTCCTCACTAGCTGAGGAGAGCAGCCCATTGCCCATGGAGCCCAGTGACATCAAGGCCGACCCCGCCGGCAGCATGCCTGCCAACACAGAGGGCCAGCCGGTGAAGAGGAAGAAGGGTCCAGCCCCCAAGATGCTGGGAAACGAGGTGTGCAGCGTGTGCGGGGACAAGGCCTCAGGCTTCCACTACAATGTGCTGAGCTGCGAGGGCTGCAAGGGCTTCTTCCGCCGCAGCGTCATCAAGAGTGCCCAGTATTCGTGCAAGAACAACGGCCGCTGCGAGATGGACATGTACATGCGCCGCAAGTGCCAGCAGTGTCGGCTGCGCAAGTGCCGTGAAGCGGGCATGCTGGAGCAATGCGTTCTCTCAGAGGAGCAGATCCGAGTGAAAAAGATGAAGAAGAACGAGGAAGAGACTGCACGCACGTCTGCCGTGGTGACCCCCACCCCGGTGCCAGAGGTGGTCCCGCTGGCGCCTGAGCAGTTGGAGATGATCGAGAAGCTGGTGGCCATGCAGAAGCAGTGCAACAAGCGCTCGTTCATCGACCGGCCCAAAGTCACGCCGTGGCCCCAGAGTCAGGACCCTCAGAACAGGGAGGTGCGGCAGCAGCGCTTTGCCCACTTCACTGAGCTGGCCATCATGTCGGTCCAGGAGATAGTGGACTTTGCCAAGCAGTTACCTGGCTTCCTAGAGCTCACCAGAGAGGACCAGATTGCCCTGCTGAAGACCTCAACCATTGAGATCATGCTGCTGGAGACATCGCGGAGATACAACCCTGCCATTGAGAGCATCACGTTCCTGAAGGACTTCAGTTATAACAAGGAGGATTTTGCCAAAGCAGGGCTGCAGTTGGAGTTTATCAACCCCATCTTTGAGTTCTCCAAGGGCATGAACGACCTGCACCTGGACGAGGCGGAGTATGCTTTGCTCATCGCCATTAACATCTTCTctgcaggtcagaggtcaagtGACCGGCCCAATGTGCAGGACCATGAACTGGTGGAGCGACTGCAGCAGCCGTATGTGGACGCACTTCGTTCTTACATCATGATAAAGAGACCAAACGATCACCTGATGTTTCCACGCATGCTCATGAAGCTGGTCAGCCTCCGCACCCTCAGCAGCGTCCACTCTGAGCAGGTCTTCGCCCTGCGCCTCCAGGACAAGAAGCTCCCGCCGCTGCTGTCTGAAATCTGGGACGTCCACGAGTGACTCCGCTGACGCCCTCACGGAACTCTGCTGCGCTTCGCAAACGTGTGTACTTGGATGGACATTGGAGTGTCGAAAAAAAGACTTGAGAATGAAGCGATGCCTCCAAGGCTACCCAAACACGACGAATCAAACCTACAGATTGGTTGCCAGATTGGAGGAACTTTTTTtaaattctatttttttttaatgtcttCTGTGTGGTTTGGCAGGATATTGATGGCCCTCTCTCCTGCAGACTGGGACACTAATCTCATGGGGGAGGTTGGGGcacagaaatagaatgaatataatTGGTATTTCTATGGGTTGAGGATTGTGCACACCTGATTTCTGTCCCTCACCCATTCCGTTGTATTAAAGGTGAGACGGCTTGTGGTGAGATTGTGCTGAGACTTGGCTCAGACTTGCTAGCCAGTGTTAACCATTTAAATCTATTGATATCTGTTGATATTCAGTCTCGTGATAGACATATCTTTAATGACAATTGCCAAGAAGCTCCACTCTCAGATCCACATCATCGATGATAACCCCATAGTGAAAATaaatggaaaaatacatgttATAGCCCAGTGTTGCAATGGGATAGGATAGAGGTATTTTAACTGCTGCCCAATGTTAAGAAATGTCTTATTGGTGTCCACTGTCCAGATGTATATTAGAATGGTAGGTCGCCTGCTTGATACTGTTGCGATTTTAGCAGTTTAATATTCAGCCATCTGATTTGTTCTCCTCTCGGGGAAGGAACAGGAAAGCAATTCTGATTGAATTGTTTAAGGTAAAGTGATTGGAAGTGTTGGTATCGTCTACCACTTTCAAGCGCAGGGCCCCCACCAACCGTTTGTAAATGCACTCAAACATTGATTTACATGTACAAAGTATATATTACtatgacaaaatatatatatatttagtatgCCCACAAGTGAAGACATCCATACAAAACGACTGTACAATCAACACTCTCTAACGCACAAGCTAGCAGTGATTTATTTTTAAGCGTGACTGGGTATGTCACGGACAAGCTGAGACCTTATACACTGGAACAACTTCAATGCTAAGCTTAGGCTATAGGTGGGGGCACAAAAAACTCATGCAGTGGCTCGTGGGTCTGCTTACCCACAATCTGCCCCGCCTACCttgcgagcaaaacattttagtgctCCTCCCTCATGACAGTGAAGAACACATTttagttttaaagttaatttcctgcaattctacacttttTGCCATAGGGCGGaggcaaatgtttgcagtttttaatatggtAACTGATTATCAACCGGTCGGTCATTCGACCATGCTTACTACAAGTTTGGTAAAttagctggccgctagactatCTAAGCTGACCTGGGCTAAttgactgctgatgcacaacccaattttttttaaattgcactTTGTCTTTTATTGTAACtcgcaacagtaagttgagaccccatcCCTGGTCTAGTCATATGTACTGTCCTCCCCTCCACCAAATCAGCATGATTCAAGACATCTGAGTGGAAACTTTGTCTAAAATGTGCTTTGCATCCCACAATAGTTGGAATATCAAAATAAGTAAAATTGTGCTCCTTGTGTGGGCAGTACTTTCTTCAACGGTAACATTTGTGGGTTACACTTTATAACTTCAATGAATAAACCATTGTAAATGTTTTAAACGCTTATATACATCTATGAATGTCTACTAATAATGAAATACTTAATAGTTTTAAACTATTTATAAATGGTTATTCGTGAATGTTATTAGTCTTACCCATTTGATTACTAATAAGGCCATTATAACGTTTCACTCGACTAAGCTCTGTTATTCATCTTTTTTTCCCTTCATGTTTCTATCACAGTCCTTTTGTATGATGACGACTTCTCTAATGTGACACTTTTATTAAACAAACGTTCAGAAGGAATTAGAGAAGGAAAGCTTTTTTGTTGCGATTTCTGAGTGACAGTTTTGTCCATTCCTTACAACTCAAATcagtgaaatagagagaggagagttgaggaCTCTGAGACAAAATGGGGCGATTTATCATAAGTTGCACAATATGTCAAAGTAGCACAGAGATAAAGGAGGTAAGATACATTGGGGcataaggttttcacacacttctACACTATTCAAAGGGTTTGCTCTTCCCTGGGCATGTGTGTGGAGCCATCTATTTTCAATTCCTCTTGAGACCCAAATGTCAAAACCATACAATCACAGTTTTTCTTCTTTTTCCCTTCAATATGTGACTCATACCAGTGAATGATTTGTCTGCATTGAAATTACATTATTTCAGTATTTTCAATATTAATAGAAAACTAAAAATGAACACAAGGTATGCGATTTAATGGTATGGAGTCTTAGGTCTAAATTATGTTTTCAGTTGTTTGGAATACACAATGTTCCTTGATATTATTGTTAATACTGTTGGTAACTGAAAGTTGATTGTAATAGAATTTACGACATTCTGGTGTGCAGAACTCATTTAATTCCCTTCTCTACATCTTAAAAGGGTGAAGCTGTAAACAATATTGTCATAAATGCAAActtatttgaatgttttttttaacactttaGGACCGTCTATATTCTTTTATATGTAtaaattaaaacaaaaatatt

Function

GO: NA

KEGG:

id description
K08536 NR1H3, LXRA; liver X receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594173 lncRNA upstream 8306 56324937 ~ 56325170 (+) True G524199
TU594074 lncRNA upstream 51503 56278248 ~ 56281973 (+) True G524139
TU594032 lncRNA upstream 103824 56208278 ~ 56229652 (+) True LOC110526177
TU594000 lncRNA upstream 191270 56140696 ~ 56142206 (+) True G524074
TU593999 lncRNA upstream 192998 56139929 ~ 56140478 (+) True G524073
TU594293 lncRNA downstream 226646 56584276 ~ 56589481 (+) True G524303
TU594362 lncRNA downstream 319479 56677109 ~ 56756337 (+) True G524371
TU594512 lncRNA downstream 530919 56888549 ~ 56889643 (+) True G524519
TU594514 lncRNA downstream 534756 56892386 ~ 56892635 (+) True G524521
TU594462 lncRNA downstream 535615 56893245 ~ 56895396 (+) True G524469
LOC110525039 mRNA upstream 5473 56321703 ~ 56328003 (+) True LOC110525039
XM_021606855.2 mRNA upstream 99376 56185132 ~ 56234100 (+) False LOC110526177
XM_021606851.2 mRNA upstream 212729 56020625 ~ 56120747 (+) False LOC110526175
XM_036980467.1 mRNA downstream 4401 56362031 ~ 56445865 (+) False LOC110526181
XR_005052168.1 mRNA downstream 4420 56362050 ~ 56427931 (+) False LOC110526181
XM_036980470.1 mRNA downstream 4423 56362053 ~ 56445865 (+) False LOC110526181
XM_036980478.1 mRNA downstream 4423 56362053 ~ 56445865 (+) False LOC110526181
XM_021606866.2 mRNA downstream 4424 56362054 ~ 56445865 (+) False LOC110526181
TU593913 other upstream 212742 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 417530 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 766977 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 848869 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 1392603 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 1218454 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1246478 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1264218 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1281844 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 1345828 57703458 ~ 57710340 (+) True G525912

Expression Profile