RNA id: XM_021607014.2


Basic Information

Item Value
RNA id XM_021607014.2
length 4367
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110526226
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57928778 ~ 57936266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATGTACATTATGAGGGCTCCATCTGTTTAAAGTCGCTTAGAATACTGTCCCGTGATGCAGTAGGTAGTGCGTGATGTAATTTCGCAGCAGATATAAATATCGTAGACGAGGGAAAAGCGGCATGGCTGAGCCGCGCTTGCCTAGACGGCCAACACTTCAACTTATACTTGGACAAGTTCGACTCGAATCTACACACGTTACCTCCGAGAGGGACAGTCATACCAAGCAATAATAGATGTCGCACCAACGGGAACTCATCTTTGTCTTGGAATGAGCGTCTTTTGTAGCTTTTTTTCATTCGTTCCTTTTTTCTTATTCGGAGTTCAACGTAAAGACCGGCACTGGGGTGATATTTTTAGTCACTTAAACTCCCTCAAACACTGTAGGCTACTGCAGTGTTGGCAAGGATGGCTTTTCAATCGGCCCTCTTACCAATATTGGTCTTGGGACTGATGACTAGTTTGGTGCGTTGTGCCCCCTTCCCTGGCAGGCTGAATGGCACAGTGGAACGACACTGGGAGACACTCTACTCGCGGTCCTTGGCTCGGATCCCcggggagaaaagagagataaACCGGGACAGCGACTATCTTATGGGCATTAAACGGCTACGACGCCTTTATTGCAATGTAGGAATTGGGTTTCATATTCAAGTTTCACCCGATGGGAGAATAACAGGAGTGCACAGTGAAAACCGTTACAGTCTCCTTGAGATATCTCCAGTAGAGAGAGGAGTTGTGACAATCTTTGGCGTCCAAAGCAGTCTATTCGTGGCCATGAACAGCAAAGGGAAGCTGTACGGATCTGTTCATTACAACAACGAGTGCAAATTCAAAGAAACTCTCCTGGCAAATAATTACAACGCTTACGAATCGGTGGCATACCCAACGATGTACATTGGACTAAGCAAGACTGGTAAAACAAAAAGGGGAAACCGAGTGTCACCAGCCATGACGGTGACGCATTTCTTGCCAAGAATCTGAGTCACTCAGAAATAGACTTAACCTCAAAGGTGGGGTGAGGGGGACTCAAAATGATGCACTTTTAACTGGAGTTTTATGCAAGACTAAGTGTATCATCCTGTTTAAAATGTTATGTATAAGTTTGTATATCAGTTTATTTATTATGTAAAACAATTTTGTATTTGGGCAGGAAACAGGTCCTCACATCAGGGGGAATTTCAGAAATCAAcacatttatttatgttttttaatTTATCCGAAGTCTGCTGCTATTAAGTGTTTGGGTAAGTGAGATTCCTTTGTTGAATTATGGTTTTCTTTGCACTGTTTATAGACAAAATATTCTACAGCGACAGAGCAAAGGATACTTTTGTATGACTTATTTTTCTTCTATGGAATTAACTTCTAAGTCTTAGACCGATGTTCAAACAAGGGAAATATCAAATGATTGGTTTTAGAAGCAGAAGCAATTGTCCAATGGCAGGACTCTTTGTAGGCATTGGAGTCTAATTGAAACAGTATCAGCTTACTACTGGTTACAGAATGAGCCGCGTTGAAGTCCTATCCTCTCAAATCTGTTTTTAGCTCTGCCAGGGGGTTGAACTTTGAACTTTTCTGCAGTCAATCTTTGTCAGATCTATAAGACTCTGGATAGAGAGAGGCATCTTCTTGACATTGTATAAGCAGAGAATTTGAGAGTTTATAGGCAAGGTCAGTGTGCTGACACACAAGGCAGAAACCATAGCCATGGCTCTATAACATACAGCTTTTACGAGGGgaagtaaaaaaaaatcaaagtCCTCAGCTGTATAGAGGATATATGGATCCCAAAATGATTAATTGAAATCATCACAAGTTCCGCATCAGAGCTCCTCCCTGAGTGCAAAAAAAGAAGATAATGTAATGATTGTCACAGGTTGTTTTCCCCAAGTGTGTACACCGAAAaggtatactttttttttttttttttttttttggggggggggcatgcaTTGCCTCCCATTTCTTCCCATTGCCCCACTGTCCTTGTTATCTATCCTCTACCTCACATAATCAACAAATCCCCTCAAAACTTCTCTAAAGTTTGTCCTGTAGTAACTCTGTTGAACCAGTTTGAGATTAGCCCTAATCTTCTCGGAGCACCATGCCATAGGCAGAAGttcaggcagccattttgtcccagttGCGCCTTGTCACGTTTGAGCTATCTTTACCCTGTGATTTACTTTTAGAAAGGATGATCATGGTGGGAATATTTACAGACAGCTGTTAGACTGCACTATATGCTTAACCGGTAACCCTATATTtttctctatatattttgtaaatATAACCCCTGGTAACTGGCGGAGCAGAGCGATGCTGCTTCAAAAAGTCTGTTATTCCTCCTTTGGGATCATTCATTCACAGACGAAGGGGATTGACCAGGAGATGGCCCATGCCAgagggtgtctctctctctctgtctgtagtcccAGTCGGTATTCGCTTAATAATAAGGAATTCCCTCCACCACAAATTGGGGAAAAAACAACATTCTTTCCTATTGACCTCCATTGTAAAAGAGGCAACTTTCTTCATCGTTTTTTTACAATGTCGAAAAGCTGCTGTGTTCAACGTAACCAGGTCAAAAAATCCTGACCTACGGTTTGCAATGCTCCCACGTAGGGAAATAGAGCCTGCGAGAAGAGCCCTGTGCTGGGGCTTCAGGCTAGTCGGCGTGGGAGAGAGCGGGAAATCTGGGGACCCGgtgtccaagtaggctacacctagctatgtgtgtggaaaacatttcatCACAGCTAAGACATTTAACTTGCTTAGTATAGTCCATTTGTAACTCCACTCATTACTTGTAGCTGTATAAGccatttgtttgtgttgttggttttggctaatgttagctagctaccactAACGTGGCTGCTAGCACGGTCATGAAAAGGGGCATAAGGGAAGACCTACAATGTtacgtttttttgttgttctaTAAGTAGTGAGAACACTAGGAAGCTGGCAATGTTGAAAAGTTATCTTTAGGCATGTTGTACTTTTCGCAAATGTTAttttgtaattgactaaaacaagcagacaacaaGAAAGTTGCATTTGAAAAAGGTAACGTTTTTACTCTGAGCCAACAGAGCAACCTATGTTGCGGATGTTTTCCCCACAAGCGGGCCGGGCTGCAGCGTTCTATCTAATACCGACTGGGACTATTAGAATAGTTCTAGATTGTACGATGGTGTTCATTCTCTTCTGAGAGGGTTCCATCTCAGGTTCAACATTCCACATACCATGGCAGTTTACAAGGTGCAGTACTGATTTCAGACAACTCAAACTGGAAGCGAAGGCCCAGTGTTTTATATTCAATATAACAAAAGTAACAATAGCGTCCAAATCCTGAGAAATCTAACGAGGCGTAACTTTTGACACAGCAAATAGCTTTTCTAAATGCATCTCACTGGGTAGTAGTAAAAAATAGAATGGCTGAGGCTCCAGCAAATATCTCAGGGTGTTGTTGGTGAACTCTCGGTGTCCATTTCTAAACACCTGCTGTGGAAGTCTAGGTCTCCCGTAAAACAATCCTAACCTAGATCCCGTCTTGCCCTTCAAAAAAAAAGACACGAGCACACGGCAGCCAAAATGAGTCAAGACTACGATGCTCTTGTCTACCCTCCAGCTCCTGAGACCGACTGGTCAGAGAGCTATCCAATGCTGTACCAAACTTAATATTGTCACATATGACCTGGACGCTCAAAACACCTGTTGGTAATATTATTTAGTCACCCGAGACATCAGGCTGCACTGCCAATCCCATAACTATTTTCCTTTGCCACAGCTGTGCCAAACGTTCCCCAACAGACTGTTTTGCATGGCTCACCATAATGTTTACAAAAAGACTGAGAAGCCACTGGCAAATATTCTGTGACCTCTCCCATCGACCCTGTTCCAACCCCAGGAGAGTCACCTCATTTGCTTACACAGCAAGTGcacaagcaacacaacacaagtgcacaagcaacacaacacaatgatcGGAGAAGTGCACCATGTAGACAAGAGAGTTTGAACAATTGTTCAGACATTTAAATCTATCCCTGAATCTATCTGATGAGACGGCACAGAGACAAGAACTTCAAGTGCAGAATAACGAGCATGTTGTCAGTGTTAAATGGTCATCATCTATTGTCTCCTCTGGGCGCTCATTTCTTCCACTGCGGTGCGGTTTCTGCACCCATTGGAGGGCTCTTGGGTCTCAAGTAACAAGTGCTTTGAGTCCTGTGGTCTTGTTACTCATCATCTCTATTATCTGTAGTTTTATACAGGTCTTGTTAAATTATTTTGACGTATGTGCTGTGCACATGACTAATGCCTAACTTAAATTTGAAGTTAATAAAA

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596557 lncRNA upstream 53798 57874116 ~ 57874980 (+) True G526418
TU596555 lncRNA upstream 55410 57873168 ~ 57873368 (+) True G526416
TU596554 lncRNA upstream 55668 57872766 ~ 57873110 (+) True G526415
TU596550 lncRNA upstream 59076 57869500 ~ 57869702 (+) True G526411
TU596533 lncRNA upstream 77581 57850993 ~ 57851197 (+) True G526395
TU596586 lncRNA downstream 7549 57943815 ~ 57945202 (+) True G526447
TU596601 lncRNA downstream 15267 57951533 ~ 57951744 (+) True G526462
TU596615 lncRNA downstream 45977 57982243 ~ 57982469 (+) True G526476
TU596630 lncRNA downstream 69972 58006238 ~ 58006461 (+) True G526491
TU596655 lncRNA downstream 99029 58035295 ~ 58040467 (+) True G526515
XM_036980584.1 mRNA upstream 7708 57916345 ~ 57921070 (+) True fgf3
XM_036980581.1 mRNA upstream 65022 57842994 ~ 57863756 (+) False LOC110526223
XM_036980583.1 mRNA upstream 65022 57842994 ~ 57863756 (+) False LOC110526223
XM_036980582.1 mRNA upstream 65022 57851727 ~ 57863756 (+) False LOC110526223
XM_021607009.2 mRNA upstream 65022 57851759 ~ 57863756 (+) True LOC110526223
XM_021607011.2 mRNA downstream 4974 57941240 ~ 57943684 (+) True fgf19
XM_021607019.2 mRNA downstream 215574 58151840 ~ 58158582 (+) True LOC110526232
XM_036980591.1 mRNA downstream 282623 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 283288 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 283288 58219554 ~ 58228939 (+) False LOC110526234
TU596076 other upstream 110498 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 218438 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 286296 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 301159 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 322411 57604108 ~ 57606367 (+) True G525861
TU596687 other downstream 174640 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 335813 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 382654 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 842457 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1835442 59771708 ~ 59772084 (+) True G528653

Expression Profile