RNA id: TU527976


Basic Information

Item Value
RNA id TU527976
length 1747
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G464967
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 1554057 ~ 1555803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgttctctgttttgtgagtcctccagatcagaggcagtagtgatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagtgatgaccagggatgttctctgtttagtgagtccaccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagtgatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagtgatgaccagggatgttctctgtttagtgagtcctcctgatcagaggcagtagagatgaccagggatgttctctgtttagtgagtcctccagatcagagacagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagagacagtagggatgatcagcgatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagagacagtagggatgaccagcgatgttctctgtttagtgagtcctccagatcagaggcagtagggaggaccagtgatgttctctgtttagttagtcctccagatcagaggcagtagggataaccaaagttgttctctgttttgtgagtcctccagatcagaggcaatagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcaataggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtgtggatgaccagggatgttctctgtttagttagtcctccagatcagaggcagtagtgatgaccagggatgttctctgtttagttagtcatccagatcagaggcaatagggatgaccagggatgttctctgttttgtgagtcctccagatcagagttagtagggataaccaaggatgttctctgtttagtgagtcatccagatcagaggcagtagggatgtttagtgagtccaccagatcagaatcagtacagattaccagtgatgttcactgtttagtgagtactctagatcagaggcagtatgatgacgagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtaggaacgaccagtgatgtcctctgtttagtgaatcctcaagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccaccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagtgatgttctctgtttagtgagtccaccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctcaagatcagcggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagtgatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagtgatgaccagggatgttctctgtttagtgagtcctcctgatcagaggcagtagagatgaccagggatgttctctgtttagtgagtcctccagatcagagacagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagagacagtagggatgatcagcgatgttctctgtttagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527974 lncRNA upstream 2834 1551006 ~ 1551223 (+) True G464965
TU527952 lncRNA upstream 56182 1497651 ~ 1497875 (+) True G464945
TU527918 lncRNA upstream 90548 1463146 ~ 1463509 (+) True G464914
TU527917 lncRNA upstream 91580 1461139 ~ 1462477 (+) True G464913
TU527909 lncRNA upstream 122043 1431638 ~ 1432014 (+) True G464907
TU527978 lncRNA downstream 1932 1557735 ~ 1566639 (+) False G464969
TU527979 lncRNA downstream 1932 1557735 ~ 1568336 (+) False G464969
TU527981 lncRNA downstream 1932 1557735 ~ 1563556 (+) False G464969
TU527982 lncRNA downstream 1932 1557735 ~ 1566639 (+) False G464969
TU527984 lncRNA downstream 1932 1557735 ~ 1579939 (+) False G464969
XM_036979187.1 mRNA upstream 435468 775664 ~ 1118589 (+) False slc4a4a
XM_036979195.1 mRNA downstream 446285 2002088 ~ 2105141 (+) False LOC110525062
XM_036979196.1 mRNA downstream 446285 2002088 ~ 2105141 (+) True LOC110525062
XM_036979198.1 mRNA downstream 593437 2149240 ~ 2199894 (+) False LOC110525063
XM_036979197.1 mRNA downstream 594029 2149832 ~ 2199894 (+) False LOC110525063
XM_036979199.1 mRNA downstream 606746 2162549 ~ 2199894 (+) True LOC110525063
TU527663 other upstream 324958 1228705 ~ 1229099 (+) True G464705
TU526870 other upstream 1095051 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 1285906 265409 ~ 268151 (+) False G463813
TU526495 other upstream 1285906 265409 ~ 268151 (+) True G463813
TU526354 other upstream 1503182 43925 ~ 50875 (+) False LOC118964799
TU528322 other downstream 506525 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 843958 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 849316 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 1249580 2805383 ~ 2834110 (+) True LOC110525071
TU528784 other downstream 1423039 2978842 ~ 2982425 (+) True G465578

Expression Profile