RNA id: TU527998


Basic Information

Item Value
RNA id TU527998
length 1403
lncRNA type inter_gene
GC content 0.35
exon number 6
gene id G464969
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 1557735 ~ 1653335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatttagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataaaagagagatagagacagtagatttagctggtctgacatattataatagagacagtagatcgagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtatgtcatattataattgagacagtagatctagctggtctgtcatactataatatagacagtagatttagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatgtaggctgtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataaaagagagatagagacagtagatttagctggtctgacatattataatagagacagtagttctagctggtctgtcataatataatagagacagtagatcgagctggtctgtcataatataatagagacagtagatttagctggtctgtcataatataatagagacagtagatctagctggtatgtcatattataattgagacagtagatctagctggtctgtcatactataatatagacagtagatttagctggtctgtcataatataatagagacagtagatctagctggtatgtcataatataatagagacagtagatgtaggctgtctgtcataatataatagagacatgtagatctagctggtctgtcataatataatagagccagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataaaagagagatagagacagtagatttagctggtctgacatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatcgagctggtctgtcataatataaaagagagatagagacagtatatttagctggtctgacatattataatagagacagtagttctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527976 lncRNA upstream 1932 1554057 ~ 1555803 (+) True G464967
TU527974 lncRNA upstream 6512 1551006 ~ 1551223 (+) True G464965
TU527952 lncRNA upstream 59860 1497651 ~ 1497875 (+) True G464945
TU527918 lncRNA upstream 94226 1463146 ~ 1463509 (+) True G464914
TU527917 lncRNA upstream 95258 1461139 ~ 1462477 (+) True G464913
TU528011 lncRNA downstream 1326 1581265 ~ 1583940 (+) True G464969
TU528041 lncRNA downstream 20560 1600499 ~ 1602013 (+) True G464979
TU528054 lncRNA downstream 41473 1621412 ~ 1622041 (+) True G464989
TU528032 lncRNA downstream 52427 1632366 ~ 1632629 (+) True G464973
TU528064 lncRNA downstream 53591 1633530 ~ 1633915 (+) True G464999
XM_036979187.1 mRNA upstream 439146 775664 ~ 1118589 (+) False slc4a4a
XM_036979195.1 mRNA downstream 422149 2002088 ~ 2105141 (+) False LOC110525062
XM_036979196.1 mRNA downstream 422149 2002088 ~ 2105141 (+) True LOC110525062
XM_036979198.1 mRNA downstream 569301 2149240 ~ 2199894 (+) False LOC110525063
XM_036979197.1 mRNA downstream 569893 2149832 ~ 2199894 (+) False LOC110525063
XM_036979199.1 mRNA downstream 582610 2162549 ~ 2199894 (+) True LOC110525063
TU527663 other upstream 328636 1228705 ~ 1229099 (+) True G464705
TU526870 other upstream 1098729 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 1289584 265409 ~ 268151 (+) False G463813
TU526495 other upstream 1289584 265409 ~ 268151 (+) True G463813
TU526354 other upstream 1506860 43925 ~ 50875 (+) False LOC118964799
TU528322 other downstream 482389 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 819822 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 825180 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 1225444 2805383 ~ 2834110 (+) True LOC110525071
TU528784 other downstream 1398903 2978842 ~ 2982425 (+) True G465578

Expression Profile