RNA id: TU527999


Basic Information

Item Value
RNA id TU527999
length 1284
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G464969
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 1557735 ~ 1653335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatgtagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatgtagctggtctgacataatataatagagacagtagatatagctggtctgtcacaatataatagagacaatagttctagctggtctgtcataatataatggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatattaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtatgtcataatataatagagacagtagatgtaggctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagatggtctgtcaaaatataataaagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataataaagacagtagatctagctggtctgtcataatataaaagagagatagagactgtagatttagctggtctgacatattataatagagacagtagttttagctggtctgtcataatataatagagacattagatctagctggtctgtcataatataatagagacaatagatctagctggcccttcataatataatagaaacagtagttctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataaaagagagatagagacagtagatttagctggtctgacatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatactataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527983 lncRNA upstream 168 1565810 ~ 1569049 (+) False G464969
TU528020 lncRNA upstream 535 1559718 ~ 1568682 (+) False G464969
TU527979 lncRNA upstream 881 1557735 ~ 1568336 (+) False G464969
TU528001 lncRNA upstream 881 1557735 ~ 1568336 (+) False G464969
TU528026 lncRNA upstream 1444 1566878 ~ 1567773 (+) False G464969
TU527993 lncRNA downstream 502 1579195 ~ 1579939 (+) False G464969
TU528011 lncRNA downstream 2572 1581265 ~ 1583940 (+) True G464969
TU528041 lncRNA downstream 21806 1600499 ~ 1602013 (+) True G464979
TU528054 lncRNA downstream 42719 1621412 ~ 1622041 (+) True G464989
TU528032 lncRNA downstream 53673 1632366 ~ 1632629 (+) True G464973
XM_036979187.1 mRNA upstream 450628 775664 ~ 1118589 (+) False slc4a4a
XM_036979195.1 mRNA downstream 423395 2002088 ~ 2105141 (+) False LOC110525062
XM_036979196.1 mRNA downstream 423395 2002088 ~ 2105141 (+) True LOC110525062
XM_036979198.1 mRNA downstream 570547 2149240 ~ 2199894 (+) False LOC110525063
XM_036979197.1 mRNA downstream 571139 2149832 ~ 2199894 (+) False LOC110525063
XM_036979199.1 mRNA downstream 583856 2162549 ~ 2199894 (+) True LOC110525063
TU527663 other upstream 340118 1228705 ~ 1229099 (+) True G464705
TU526870 other upstream 1110211 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 1301066 265409 ~ 268151 (+) False G463813
TU526495 other upstream 1301066 265409 ~ 268151 (+) True G463813
TU526354 other upstream 1518342 43925 ~ 50875 (+) False LOC118964799
TU528322 other downstream 483635 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 821068 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 826426 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 1226690 2805383 ~ 2834110 (+) True LOC110525071
TU528784 other downstream 1400149 2978842 ~ 2982425 (+) True G465578

Expression Profile