RNA id: TCONS_00000030


Basic Information

Item Value
RNA id TCONS_00000030
length 1998
RNA type mRNA
GC content 0.60
exon number 12
gene id XLOC_000014
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 218524 ~ 225137 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGAGCTCTGTGTGCAGTGCTGTGCCTCGGCCTGGTGGTGGCGCTGCAGCAGAAGCCGCTCCACAGATCCGTCCATGGGCAGCAGTGGGTGTCGGAGAACTGCCGGCGGCTCTCCACGCTGCTGCGGCAGAAACAGTCAGCGGTGCGGAGGCTGGACACGGCAGCAGCGGCTCTGCAGCGAAACCAGGAGCTGGCACCGGCTGAGAAGCTGTTCCGCATCCACACGCTGGAGGTGTTCGAGCGCGAGCTGAACGAGAGCGAGAGATCCCTGTTCCAGGCCCTGGAGGGACTGCAGCGCGTGCTGAAGGGAAACCTCAGAGACGTGGTGAACATGAAGGAGAGCAGCAGACAGCGGCTGGAGGCACTCAGAGAAGCGGCCATCAAGgAGGAGCAGGAGTACATGGAGCTGGTGGCGGCAGAGAAACACCAGCAGGAGGCGCTGAAAGTGGCGCAAGATCGAAACAAAACCCTGTCAGTGCTGGACGAGATCCTGGAGGATGTGAGGAAGGCTGCGGACCGCCTGGAGGAGGACATCGAGGAGCACGCCTTCGACAACAACAAACAGATGAAGGGTGTGAATGTGGAGGCGGTGCTGCGAGtggaggaggatgaggaggacgGGAAGAGGAAGAACGCCTCCAGGCCGCAGGTCCAGGGTAACCTGGGACTCAGCATGCTGATCGACTCGCAGAATAACCAGTATGTGCTGACCAAACCCCGGGACGCCACCATCCCCCGCGCCGACCACCACTTCATCAAGgatgtAGTGTGTGTGGTGATGCTGTCTCTGCCGTGTGGTTGGCTCTGTACACTGATGGGTCTCCCGCCCATGTTCGGCTACATCATCTGCGGGGTTCTGCTCGGCCCTTCCGGACTCAACAGCATCAAATCGATGGTGCAGGTGGAGACGCTGGGAGAGCTGGGGGTGTTCTTCACACTCTTCGTGGTGGGTCTGGAGTTTTCCCCTGAGCGCCTCCACAAGgtgtggaGGATCTCCCTACAGGGCTCTGTTCTTCTCAGTCTGCTGATGGTGTGTGTGGGGCTGATCTGGGGTCAGCTGCTGGGTCTGCAGCCCACACAGACACTCTTCATCTGCAGCTGTCTGTCCCTGTCCAGCACCCCACTGGTGTCCCGCTTCCTGAGCGCAGCTCCCGAGAgtgAGCTGGACTACAGCAGTGTGTTGCTGGGGATGCTGGTGATGCAGGATGTCCAGCTCGGCCTCTTCATCGCTGTAATGCCCACATTGATCCATGGAGGTGATGGAGAAGTGGACAGtgttgtGCTGGCGGCGCTGCAGGTGCTGGTTCTGCTGGCTCGGGTTCTGGTGTCTCTGGCCGCTGTGGTTCTCCTCTGCTGGATCCTGCGCTCGCATCTGATTGGTCCGTTCTACAGGAAGCTGCACGCCGAGAGCAAAGGAAACAAGGAGATCGTGGTGCTGGGGACCAGTGCGTTTGTGTTCATGATGCTGAcgCTGACGGAGTTCATGGACGTGTCGATGGAGCTGGGTTGTTTTCTGGCCGGAGCGCTGCTGTCCTCTCAGGGTCACATGGTCACGGCAGAGGTCATGACCTGCGCTGAACCCATCCGAGACTTCCTGGCCATCATCTTCTTTGCTTCTATAGgGTTTCACGTGTTCCCGACCTTCGTCCTGTATGAGCTGACCATCCTGCTGGTGCTGACTTTCTCTCTGGTCATCATGAAGTTCATGATAGCGGTGGCGGTTCTGTCGGCTCTTCTTCCTCCGGGGTCGAGGCACATCCGCTGGCTGGTGTCGGCCGGTCTGGCGCAGGTCAGCGAGTTCTCCTTCGTGTTGGGCAGTCGAGCGCGGCGGGCCGGCATCATCTCCAGGGAGGTGTATCTGCTGGTGTTGAGCGTCACCACACTGAGTCTCCTGCTCGCTCCGGTGTTGTGGAGAGCTGCTACGATGCGATGCGTCCCACGCGGAGAGAGGAAGCGCACACCTGAGCACGAGAAACCTGCGCTCAATCTGTCCTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015299 solute molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071030-1 Predicted to enable solute:proton antiporter activity. Predicted to act upstream of or within cation transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO3 (transmembrane and coiled-coil domains 3).

Ensembl:

ensembl_id ENSDART00000109529

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003002 lncRNA upstream 61242 156792 ~ 157282 (+) True XLOC_000011
TCONS_00000021 lncRNA upstream 85309 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000023 lncRNA upstream 87303 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000022 lncRNA upstream 88933 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000017 lncRNA upstream 180078 36727 ~ 38446 (+) True XLOC_000005
TCONS_00002802 lncRNA downstream 2116 227253 ~ 235533 (+) False XLOC_000015
TCONS_00002803 lncRNA downstream 11263 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002804 lncRNA downstream 12254 237391 ~ 241707 (+) True XLOC_000015
TCONS_00003003 lncRNA downstream 130344 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA downstream 130634 355771 ~ 358562 (+) True XLOC_000018
TCONS_00000028 mRNA upstream 36266 176583 ~ 182258 (+) False XLOC_000013
TCONS_00000029 mRNA upstream 36266 176586 ~ 182258 (+) True XLOC_000013
TCONS_00000027 mRNA upstream 51126 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000026 mRNA upstream 60388 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000025 mRNA upstream 66526 144284 ~ 151998 (+) True XLOC_000010
TCONS_00000031 mRNA downstream 2104 227241 ~ 241707 (+) False XLOC_000015
TCONS_00000032 mRNA downstream 5226 230363 ~ 243798 (+) False XLOC_000015
TCONS_00000033 mRNA downstream 19939 245076 ~ 258138 (+) True XLOC_000016
TCONS_00000034 mRNA downstream 34902 260039 ~ 296055 (+) False XLOC_000017
TCONS_00000035 mRNA downstream 34902 260039 ~ 296057 (+) False XLOC_000017
TCONS_00000003 other upstream 205267 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 34903 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 288876 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 312452 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 351307 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 993554 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06208641_06214104.mRNA True 2021 mRNA 0.59 12 CI01000299 6208612 ~ 6214104 (-)
bowfin (Amia calva) AMCG00014439 True 4606 mRNA 0.43 14 CM030128.1 13882719 ~ 13903655 (+)