RNA id: TU583870


Basic Information

Item Value
RNA id TU583870
length 332
lncRNA type intronic
GC content 0.36
exon number 1
gene id G514709
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47422303 ~ 47422634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATAGCTGCATTGACCTGATGTAACATGTCTATTATTTGTGATCTGgaatctattctattatattctattcaagGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGAAGCAGGGCACTGATACGGATGCAGGTCATAGATTTTCCCTCTGTAGTATGTTGGTTCTCTAAACCTGCATATCATAGATAAAGGTCATGTTAGAAACTGTAGTCAGTAAGAAATGTTGCATGGATAGTTTTATTCAATCGTCCTATTGTAGCAATTTTATCGAAGTATTGTATTAAGAGAAAAGCGTCTGACTTATCCTGAATTGTCCTATATGGTAATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583833 lncRNA upstream 69134 47347637 ~ 47353169 (+) False G514685
TU583834 lncRNA upstream 69134 47347637 ~ 47353169 (+) True G514685
TU583832 lncRNA upstream 69755 47347461 ~ 47352548 (+) True G514684
TU583819 lncRNA upstream 82976 47330427 ~ 47339327 (+) True G514675
TU583796 lncRNA upstream 127227 47294875 ~ 47295076 (+) True G514656
TU583873 lncRNA downstream 2367 47425001 ~ 47519480 (+) False LOC118964881
TU583881 lncRNA downstream 14704 47437338 ~ 47437660 (+) True G514718
TU583885 lncRNA downstream 28030 47450664 ~ 47453543 (+) False LOC110526910
TU583891 lncRNA downstream 28782 47451416 ~ 47466739 (+) False LOC110526910
TU583886 lncRNA downstream 30047 47452681 ~ 47453543 (+) False LOC110526910
XM_036980267.1 mRNA upstream 23877 47395367 ~ 47398426 (+) True LOC118964877
XM_021606654.2 mRNA upstream 204869 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA upstream 204869 47151162 ~ 47217434 (+) True LOC110526052
XM_036979106.1 mRNA upstream 303292 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA upstream 304344 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_036980271.1 mRNA downstream 28211 47450845 ~ 47494971 (+) False LOC110526910
XM_036980270.1 mRNA downstream 29630 47452264 ~ 47494971 (+) False LOC110526910
XM_036980269.1 mRNA downstream 42683 47465317 ~ 47494972 (+) False LOC110526910
XM_036980272.1 mRNA downstream 43711 47466345 ~ 47494971 (+) False LOC110526910
XM_036980284.1 mRNA downstream 90998 47513632 ~ 47519474 (+) False LOC118964881
TU583803 other upstream 93059 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 102253 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 399211 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 494589 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 521180 46900561 ~ 46901123 (+) True G513745
TU583904 other downstream 91152 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 527372 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1128985 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 1525983 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 1761239 49183873 ~ 49187323 (+) True edf1

Expression Profile