RNA id: TU584710


Basic Information

Item Value
RNA id TU584710
length 206
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G515460
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48899096 ~ 48899301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATTTATCAACTCAGGTCTTTAGTGCATTTAAATATTTGATTAACCTATCATGAAACAGAATAGTGGAAAATCTAGCAGTCCCGAGTTATGAGGACAGTGAAAATTCATGAAAATTCATACTTTTAGATTGCCCTCAAAATGTCAATTATTTCCTGATATCATGGGAGCCTTGATAGTCATGGTGGAAAAAAAATTGTGCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584697 lncRNA upstream 2326 48895677 ~ 48896770 (+) True G515447
TU584696 lncRNA upstream 3530 48894917 ~ 48895566 (+) True G515446
TU584589 lncRNA upstream 174352 48724494 ~ 48724744 (+) True G515346
TU584543 lncRNA upstream 223538 48674884 ~ 48675558 (+) True G515308
TU584416 lncRNA upstream 279467 48595518 ~ 48619629 (+) True G515190
TU584691 lncRNA downstream 100 48899401 ~ 48900834 (+) True G515442
TU585098 lncRNA downstream 41285 48940586 ~ 48941783 (+) True G515821
TU585113 lncRNA downstream 55808 48955109 ~ 48955421 (+) True G515836
TU585116 lncRNA downstream 58589 48957890 ~ 48958392 (+) True G515839
TU585102 lncRNA downstream 134522 49033823 ~ 49037542 (+) True LOC110526072
XM_036980322.1 mRNA upstream 370338 48419773 ~ 48528758 (+) False cntrl
XM_036980324.1 mRNA upstream 370338 48419773 ~ 48528758 (+) False cntrl
XM_036980323.1 mRNA upstream 370338 48419825 ~ 48528758 (+) True cntrl
XM_036980311.1 mRNA upstream 506089 48387256 ~ 48393007 (+) False LOC110526080
XM_021606673.2 mRNA downstream 49691 48948992 ~ 49034090 (+) False LOC110526072
XM_021606674.2 mRNA downstream 64258 48963559 ~ 49034090 (+) False LOC110526072
XM_021606672.2 mRNA downstream 163149 49062450 ~ 49063259 (+) True cmlc1
XM_021606671.2 mRNA downstream 177356 49076657 ~ 49134305 (+) True qsox2
XM_021606668.2 mRNA downstream 246826 49146127 ~ 49156002 (+) True LOC110526069
TU584412 other upstream 311208 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 946842 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1382386 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 1569852 47303183 ~ 47329244 (+) True G514662
TU585107 other downstream 49316 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 284572 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 334278 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 405824 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 487213 49386514 ~ 49387212 (+) False LOC118964898

Expression Profile