RNA id: TU585346


Basic Information

Item Value
RNA id TU585346
length 556
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G516029
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49503532 ~ 49506083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGACGTCATGTATTTGATATCTTTATGTGAAGGTTCATGTCCATATTGACATCAGTTCATTGTGTTTGAGGACGGTTCACTGACCAGTTTCCAACGGATACGATTAGACTAGTTTAACAGTTACAGAAcagctacagtagcctatcagaacaGCTGCAGTATCAGAGGCGCAGAGCCTTAATTAACGGGCTACACATAATGGCTGACGACAGCCAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAAGTCGTGGAGAACATGAAGGATGAAACAGAGACACATGAGACCAACAAGAACAGGACAAGAGGCAAGAGTCTTCTCAGACACCCGGGTGTGGTTTCCGGGAAAGGGGATCTATCATTgagcagctggagaaggaggaTCAGAGGATTCTAATGCCTTCTCTCAAGATTGGGACATGCTGTGCcccaatcctcctctccttcctgaggagtCTAACTGATGAGCAAGTCCCATGTCTTTTTCCAACCTCACATACAACTCTGAATTTATAGTCATAGTGCACCTTCTAACCACAAATGGGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585375 lncRNA upstream 91598 49366819 ~ 49411934 (+) True G516050
TU585368 lncRNA upstream 116320 49386697 ~ 49387212 (+) True LOC118964898
TU585367 lncRNA upstream 118532 49347319 ~ 49385000 (+) False LOC118964898
TU585372 lncRNA upstream 144516 49357761 ~ 49359016 (+) True G516047
TU585316 lncRNA upstream 168427 49283715 ~ 49335105 (+) True G516012
TU585416 lncRNA downstream 41898 49547981 ~ 49565332 (+) True G516089
TU585420 lncRNA downstream 51886 49557969 ~ 49567767 (+) True G516093
TU585423 lncRNA downstream 52097 49558180 ~ 49582072 (+) True G516094
TU585425 lncRNA downstream 53613 49559696 ~ 49583560 (+) True G516096
TU585431 lncRNA downstream 62013 49568096 ~ 49592137 (+) True G516101
XM_036980345.1 mRNA upstream 116781 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA upstream 137638 49362031 ~ 49365894 (+) False LOC118964898
XR_005052148.1 mRNA upstream 200176 49302665 ~ 49303356 (+) True LOC118964903
XR_005052142.1 mRNA upstream 257032 49242039 ~ 49246500 (+) False LOC110526066
XM_036980343.1 mRNA upstream 313725 49188175 ~ 49189807 (+) True LOC118964897
XM_036980364.1 mRNA downstream 12509 49518592 ~ 49522715 (+) True LOC118936463
XM_036981758.1 mRNA downstream 46946 49553029 ~ 49566639 (+) True LOC118965033
XM_021606690.2 mRNA downstream 168058 49674141 ~ 49747277 (+) True cfap77
XM_021606691.2 mRNA downstream 242705 49748788 ~ 49753260 (+) False barhl1a
XM_036981761.1 mRNA downstream 389765 49895848 ~ 49897364 (+) False spaca9
TU585370 other upstream 116320 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 196392 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 257079 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 316209 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 549241 48948617 ~ 48954291 (+) False LOC110526072
TU585910 other downstream 243105 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1214318 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1405745 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2772410 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 3145857 52651940 ~ 52655297 (+) True G519603

Expression Profile