RNA id: TU586125


Basic Information

Item Value
RNA id TU586125
length 202
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G516696
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50013611 ~ 50013812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattGATAAAGTTGTAATGCGCTGATTCTCTTCACTGCAGATCTGACCAATCACATGACCCTTCAAGAGGGTTACTACGCTACAGATCACATTCTGTCCTCAGAGGTCCTTGATGAGGATCTACCaataatcagtggttgtagagggtgcaacaggccaGTATCTCAGGAgtaaaatgtcagttggcttttcatagacaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586121 lncRNA upstream 2903 50010140 ~ 50010708 (+) True G516692
TU586120 lncRNA upstream 6980 50006281 ~ 50006631 (+) True G516691
TU586103 lncRNA upstream 53598 49959312 ~ 49960013 (+) True G516674
TU586093 lncRNA upstream 71990 49941420 ~ 49941621 (+) True G516664
TU586090 lncRNA upstream 74358 49938946 ~ 49939253 (+) True G516661
TU586129 lncRNA downstream 11705 50025517 ~ 50025776 (+) True G516700
TU586154 lncRNA downstream 35899 50049711 ~ 50050023 (+) True G516725
TU586165 lncRNA downstream 74872 50088684 ~ 50089008 (+) True G516734
TU586175 lncRNA downstream 77355 50091167 ~ 50091585 (+) True G516744
TU586176 lncRNA downstream 78263 50092075 ~ 50092450 (+) True G516745
XM_036980378.1 mRNA upstream 12595 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA upstream 12595 49948638 ~ 50001016 (+) False grin1b
XM_036980380.1 mRNA upstream 12595 49948638 ~ 50001016 (+) True grin1b
XM_036981761.1 mRNA upstream 116247 49895848 ~ 49897364 (+) False spaca9
XM_021606691.2 mRNA upstream 260351 49748788 ~ 49753260 (+) False barhl1a
XM_021606704.2 mRNA downstream 37392 50051204 ~ 50054481 (+) False kazald3
XM_021606703.2 mRNA downstream 37394 50051206 ~ 50054481 (+) False kazald3
XM_021606705.2 mRNA downstream 37401 50051213 ~ 50054481 (+) True kazald3
XM_021606710.2 mRNA downstream 58514 50072326 ~ 50086959 (+) False rsph14
XM_021606708.2 mRNA downstream 58538 50072350 ~ 50086959 (+) True rsph14
TU585910 other upstream 261862 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 626399 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 706471 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 767158 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 826288 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 706589 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 898016 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2264681 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2638128 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3912130 53925942 ~ 53955130 (+) True G521552

Expression Profile