RNA id: TU587768


Basic Information

Item Value
RNA id TU587768
length 213
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G518182
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51294188 ~ 51294400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTAGGAACACAAGTTCAATGAAAAGCAAGTATTGACAAGTTTATAACCGAACTGAGGCTGAGAGCACGCAACTGTGAGTTCAGAGACACTGAGGATCTAACGCTAAAGGAGAAAATTGTGTTCAGCATCCCAGACAGTGTTAGCAGAAAAATGTACCAAGTAATTCAAATTAAAAGAAATTGAGACTGTATTCATATCCCATGGTACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU587717 lncRNA upstream 62366 51231525 ~ 51231822 (+) True G518133
TU587716 lncRNA upstream 63662 51229996 ~ 51230526 (+) True G518132
TU587613 lncRNA upstream 145811 51148157 ~ 51148377 (+) True G518036
TU587589 lncRNA upstream 160293 51133659 ~ 51133895 (+) True G518012
TU587572 lncRNA upstream 184095 51109782 ~ 51110093 (+) True G517998
TU587771 lncRNA downstream 5995 51300395 ~ 51300690 (+) True G518185
TU587772 lncRNA downstream 6868 51301268 ~ 51301538 (+) True G518186
TU587765 lncRNA downstream 42613 51337013 ~ 51337900 (+) False G518181
TU587766 lncRNA downstream 46205 51340605 ~ 51345527 (+) True G518181
TU587964 lncRNA downstream 268930 51563330 ~ 51566559 (+) True G518365
XM_021606776.2 mRNA upstream 68924 51159434 ~ 51225264 (+) False LOC110526137
XM_036980406.1 mRNA upstream 68924 51159436 ~ 51225264 (+) True LOC110526137
XM_021606774.2 mRNA upstream 166044 51113988 ~ 51128144 (+) False znf608
XR_005052160.1 mRNA downstream 418390 51712790 ~ 51718231 (+) False LOC118964909
XR_005052161.1 mRNA downstream 418390 51712790 ~ 51718231 (+) True LOC118964909
XM_021606787.2 mRNA downstream 588883 51883283 ~ 52006875 (+) False homer1b
XM_021606786.2 mRNA downstream 638372 51932772 ~ 52006875 (+) True homer1b
XM_021568351.2 mRNA downstream 983294 52277694 ~ 52279409 (+) False LOC110493840
TU586543 other upstream 372091 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 558952 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1542439 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1906976 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1987048 49305125 ~ 49307140 (+) True G516011
TU589106 other downstream 984093 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1357540 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 2631542 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 2975525 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 3585299 54879699 ~ 54940873 (+) False LOC110526161

Expression Profile