RNA id: TU590238


Basic Information

Item Value
RNA id TU590238
length 450
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G520509
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53091715 ~ 53092164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgctggcttgagcagggggaccttgcgtgcgctgcaggattttaatacatgacggcgtaatgtgttactaatggttttctttgagactgtggtcccagctctcttcaggtcatttaccaggtcctgccgtgtagttctgggctgatccctcaccttcctcatgatcattgatgccccactaggtgagatcttgcatggagcccaagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattttatccctgatttccttacacagctctctggtcttggccattgtggagaggtttgagtctgtttgattgagtgtgtggacaggtgtcttttatacaggtaacgaattCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590237 lncRNA upstream 678 53090782 ~ 53091037 (+) True G520508
TU590236 lncRNA upstream 2081 53089366 ~ 53089634 (+) True G520507
TU590234 lncRNA upstream 3128 53088259 ~ 53088587 (+) True G520505
TU589977 lncRNA upstream 185784 52905722 ~ 52905931 (+) True G520260
TU589976 lncRNA upstream 186058 52905436 ~ 52905657 (+) True G520259
TU590262 lncRNA downstream 16975 53109139 ~ 53109367 (+) True G520531
TU590291 lncRNA downstream 53551 53145715 ~ 53154614 (+) True G520560
TU590492 lncRNA downstream 188854 53281018 ~ 53281230 (+) True G520753
TU590499 lncRNA downstream 194255 53286419 ~ 53286990 (+) True G520760
TU590700 lncRNA downstream 465225 53557389 ~ 53557596 (+) True G520958
XR_005052417.1 mRNA upstream 23972 53066027 ~ 53067743 (+) True LOC118965081
XM_036980422.1 mRNA upstream 532803 52555023 ~ 52558912 (+) False LOC110502468
XM_036980427.1 mRNA downstream 18976 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA downstream 19092 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA downstream 19120 53111284 ~ 53202399 (+) True LOC110526152
XR_005052453.1 mRNA downstream 66747 53158911 ~ 53159015 (+) True LOC118965122
XR_005052452.1 mRNA downstream 70931 53163095 ~ 53163203 (+) True LOC118965121
TU589275 other upstream 436418 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 812717 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2169618 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2356479 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3339966 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 833778 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1177761 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1787535 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1828308 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 2392085 55484249 ~ 55484607 (+) True G523529

Expression Profile