RNA id: TU590777


Basic Information

Item Value
RNA id TU590777
length 233
lncRNA type intronic
GC content 0.39
exon number 1
gene id G521035
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53661472 ~ 53661704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattacaccaaaataaagcttaacttattgttaatccagccaccatgtcagattccaaaaaggctttacagcgacaGCAAaacatgtgattatctgaggacagtaccccatcatacaaacacatgaaaatcatatttcaaccaagcaggtgcgacacgaaagtcagaaataacgatataattcatgccttaccttagaagatcttctgttggcactccaatatgtcccagaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590774 lncRNA upstream 2189 53659015 ~ 53659283 (+) True G521032
TU590766 lncRNA upstream 13848 53647397 ~ 53647624 (+) True G521024
TU590761 lncRNA upstream 21414 53639779 ~ 53640058 (+) True G521019
TU590752 lncRNA upstream 48216 53612984 ~ 53613256 (+) True G521010
TU590748 lncRNA upstream 52439 53608820 ~ 53609033 (+) True G521006
TU590781 lncRNA downstream 5136 53666840 ~ 53667084 (+) True G521039
TU590786 lncRNA downstream 10811 53672515 ~ 53672718 (+) True G521044
TU590789 lncRNA downstream 14473 53676177 ~ 53676412 (+) True G521047
TU590793 lncRNA downstream 16493 53678197 ~ 53678478 (+) True G521051
TU590796 lncRNA downstream 19348 53681052 ~ 53681313 (+) True G521054
XM_036980427.1 mRNA upstream 459073 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA upstream 459073 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA upstream 459073 53111284 ~ 53202399 (+) True LOC110526152
XR_005052452.1 mRNA upstream 498269 53163095 ~ 53163203 (+) True LOC118965121
XR_005052453.1 mRNA upstream 502457 53158911 ~ 53159015 (+) True LOC118965122
XM_036980433.1 mRNA downstream 358408 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA downstream 358411 54020115 ~ 54035663 (+) False LOC110526155
XM_036980434.1 mRNA downstream 421041 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA downstream 421060 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA downstream 421060 54082764 ~ 54104736 (+) False LOC110526157
TU589275 other upstream 1006175 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1382474 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2739375 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2926236 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3909723 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 264238 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 608221 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1217995 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1258768 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1822545 55484249 ~ 55484607 (+) True G523529

Expression Profile