RNA id: TU591699


Basic Information

Item Value
RNA id TU591699
length 243
lncRNA type intronic
GC content 0.41
exon number 1
gene id G521913
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54269626 ~ 54269868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacagctgaggtgggagactctgtccataggacaacaatcagtcatatattgcacaaatctggcctttatggaagagtggcaagaaagccatttcttaaagatatccataaaatgtgtcgtttaaagtttgccacaagcgacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU591689 lncRNA upstream 11723 54257624 ~ 54257903 (+) True G521903
TU591568 lncRNA upstream 218107 54051271 ~ 54051519 (+) True G521788
TU591544 lncRNA upstream 226889 54042525 ~ 54042737 (+) True G521764
TU591532 lncRNA upstream 234018 54034910 ~ 54035608 (+) True LOC110526155
TU591388 lncRNA upstream 259281 54009215 ~ 54010345 (+) True G521609
TU591931 lncRNA downstream 53656 54323524 ~ 54328396 (+) True G522133
TU592071 lncRNA downstream 163219 54433087 ~ 54433300 (+) True G522263
TU592076 lncRNA downstream 164864 54434732 ~ 54434931 (+) True G522268
TU592104 lncRNA downstream 368077 54637945 ~ 54639251 (+) False brsk2b
TU592105 lncRNA downstream 368077 54637945 ~ 54639251 (+) True brsk2b
XM_036980434.1 mRNA upstream 164890 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA upstream 164890 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA upstream 164890 54082764 ~ 54104736 (+) False LOC110526157
XM_036980435.1 mRNA upstream 164890 54082797 ~ 54104736 (+) True LOC110526157
XM_021606804.2 mRNA upstream 233963 54020115 ~ 54035663 (+) False LOC110526155
XM_036980440.1 mRNA downstream 182586 54452454 ~ 54635157 (+) False brsk2b
XM_036980442.1 mRNA downstream 182586 54452454 ~ 54636666 (+) False brsk2b
XM_036980439.1 mRNA downstream 182586 54452454 ~ 54639254 (+) False brsk2b
XM_036980441.1 mRNA downstream 182586 54452454 ~ 54639254 (+) False brsk2b
XM_036980443.1 mRNA downstream 182586 54452454 ~ 54639254 (+) False brsk2b
TU591331 other upstream 314496 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 1614329 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1990628 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 3347529 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 3534390 50720401 ~ 50735236 (+) True LOC118964907
TU591700 other downstream 57 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 609831 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 650604 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1214381 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 1293880 55563748 ~ 55566499 (+) False LOC110526167

Expression Profile