RNA id: TU595730


Basic Information

Item Value
RNA id TU595730
length 2279
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G525654
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57581812 ~ 57584090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCAGGTAGTTTTAGTAGTCCTTGAAAAGAACATTTGCTGCAGGTAGTAGCTAGATAAGGTCCACCACAAATGTGAGTCAATATTAGCTTATATCTTTAACTCGTTCACAGCTGTCTCCCTTCTCCACTACCGGTAATCTAAATGGAGTATCCTGATGGTGATATCATAACATACTTGATATTCATGAAGAAGGTATTTTCCGAAGTAAGTACTGCTTATTGTCTTCTTTTAGGTAAAGTACATCTAGAATGCAAAAATAGTTTTTATTCACATTCTTGGTTTTATTTGAAGATTTAATTAAACAGCAACAGAAAGCAAAATGGTGTGAATTGCAGTTTTAAACTCCCGTTTCGATCTCTATTGTCTCTGCCACAGAGCTCAGTCCATCCTCGCCATGTAGAATCACCAGGTTGCTGTGTGTTTTGTGCTCCCTTAGAACAATGCACTTATCATTAGAGTCTGAGACAATTATCTCAATGATATTCTCATTTAGCTGGAATTGGCCCACATCCTGTTCCAAACCTTCCTCTATTACCACAGGAGATATGTCACTATCATGGTATGAGTCACAGGTGCTGACAATAACCTCCCCTGAATTAGGCAAGGCTAAGTCTTCAATGGCCTGAACATACACTACTGTCTGACACTCCATGTTCTCTTCAGGGACATCGACCCATGGCTTGACCTCTGTATTGTGAGGGGTCTTTCTAGGTCTGCCTCTAGCAGGGGCAGAGTGGCTAGACTCCAGAGCTGCTAGGGTGTTAGGACATCTGGGGAGCTAGCTATCTTCTCTCTTTTGATGGGAGAACTGGTGGCGAACCAGGCTCTGCATTAGCGTGTAGCCAGCACCACATGTCGGACATTTGTAGGACTTCTCCTCAAGGTGGGACTTCATGTGGCAGCGTAGCTTGGTGGCCATGGTGTAGGCTTTCCCACACAGCTCACACTGTGTGAggtctctcccctgtgtgtaaACGTTCGTGGGCCCGCAAGGTGTGGGGGTCCCGCAAGGCTTTGCCACATATAGGGCAGAGGTAGACTTCCCCTGTGTGTGATATGAGGTGTCTGCGGAGTTCAGGCACCTGTGAGAAGTACTGATTGCAATGGTTGCACTTGTAAGGCTTTTCCCCTGTGTGGATGTGTAGATGCCCCAAAAGATTCCCCCGCTGTCGGAATGTCTTATTGCAGTGGGGACAGGCATAAGGCCGTTCTCCTGTTTGCAAGCGCATGTGATTCCTAAGGGAGCCTGAATTGGCCAGTTGGTTACCGCAGACAGGGCACTTGAGCTTAGGAGCATGGTAATTTTCTTCCTTAGCGCGGTGGGCCTCCCTATGAATACTGAAGGCCAGCGGGCAAAAGCCTTCCCACATATATCGCAGACAAAAGGCCTCTCTCCTGTATGGAGAACTTCATGCTCCTTCAGGTCCCGTTTCAGGCCATAGCTCTTGTCACGCTGCTGGCACTTGAATGGCCTCTCTCCCTTATGCATCAGAAGGTGGGCCCTGAAGTTCTCTTGGGAGCTGTAATTCCTACCACACTCTGTGCATAAGTAAGGCTTTAGGCCCAAGTGGGTGAATTTGTGCTTCTTCAGGTGATATAGCTGAAAGAAACTCTTGTCACACTGGTCACTGGTCACACTTTCCCTGGTGTTAAAGAGGTCTGGAGCCATCATAAACTCCTCTGTGTCTTGCTTCCCCCCTTTGTCAAGATCCTTTGGGATTTCATCTGAGCTTATATTTTCTCCAGCTTTTATATCTGTTTCTTGGCAAGCTCGTCCATTTTCATCACCAACTCTGGACGTAATCTCCAATGTCACTTGACGATCCAGATACCCATTTTTGCACACTTGAAGACGCTTGTGGATGCAGCTGACTAATGAATGTACCTTCCTGGGTTCAGCAGCCCGTCTGCAACTGGCCCTGACAACCTGTGGCCCCTGCACCTCCTGGGGTTTTCCTACCACATTATCTGGTTCTTCACTACTCTTTGAAGGCTCGTCAGCAGGACTCACAAGTTTGTCCCCAGAGCATGGCACATTGGTTATTTCTGGACTGAAACAttctgtttttattattttgcAAGAGTGAACTTCTCTATTCTGTTCCATTGTTTTCTCACCACTGGAATGAGAGTCTCTCACACATCTCTTGTTCATTTTGTAGATAAGAGGTTTGCTCCTTTTGATTCCAGTCTGgcttttcttctcctcctccaccaccatagACTCTGTAAACCCCAGTGGAGTTGTTGACATGTCTGAATCTTCAGTGTGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595887 lncRNA upstream 149260 57429603 ~ 57432552 (+) True G525799
TU595719 lncRNA upstream 288396 57280607 ~ 57293416 (+) True G525643
TU595775 lncRNA upstream 303777 57277595 ~ 57278035 (+) True G525698
TU595747 lncRNA upstream 340929 57240665 ~ 57240883 (+) True G525671
TU595743 lncRNA upstream 344741 57236848 ~ 57237071 (+) True G525667
TU595732 lncRNA downstream 1428 57585518 ~ 57587316 (+) True G525656
TU595723 lncRNA downstream 8564 57592654 ~ 57594166 (+) True G525647
TU595731 lncRNA downstream 10311 57594401 ~ 57594669 (+) True G525655
TU595991 lncRNA downstream 97898 57681988 ~ 57682196 (+) True G525897
TU595997 lncRNA downstream 110542 57694632 ~ 57694840 (+) True G525903
XM_021606978.2 mRNA upstream 13339 57558525 ~ 57568473 (+) False atg13
XM_021606979.2 mRNA upstream 13339 57558525 ~ 57568473 (+) False atg13
XM_021606980.2 mRNA upstream 13339 57558525 ~ 57568473 (+) False atg13
XM_021606981.2 mRNA upstream 13339 57558525 ~ 57568473 (+) False atg13
XM_021606982.2 mRNA upstream 13339 57558525 ~ 57568473 (+) False atg13
XM_036981766.1 mRNA downstream 3503 57587593 ~ 57591339 (+) True LOC110526205
XM_021606991.2 mRNA downstream 37705 57621795 ~ 57635241 (+) False fbxo3
XM_021606990.2 mRNA downstream 37707 57621797 ~ 57635241 (+) False fbxo3
XM_021606996.2 mRNA downstream 55347 57639437 ~ 57642487 (+) False LOC110526214
XM_021604991.2 mRNA downstream 60577 57644667 ~ 57647053 (+) True aplnr2
TU595721 other upstream 742 57576084 ~ 57581070 (+) True G525645
TU593913 other upstream 1461078 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1665866 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 2015313 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 2097205 55484249 ~ 55484607 (+) True G523529
TU595951 other downstream 20018 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 37758 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 55384 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 119368 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 233734 57817824 ~ 57818280 (+) True G525972

Expression Profile